Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   DQL39_RS02655 Genome accession   NZ_LS483353
Coordinates   497402..498364 (+) Length   320 a.a.
NCBI ID   WP_023078855.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC4001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 492402..503364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL39_RS02635 (NCTC4001_00521) - 493111..494331 (-) 1221 WP_010922430.1 DUF3114 domain-containing protein -
  DQL39_RS02640 (NCTC4001_00522) queA 494338..495366 (-) 1029 WP_011284937.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  DQL39_RS02645 (NCTC4001_00523) nagB 495568..496317 (+) 750 WP_011888796.1 glucosamine-6-phosphate deaminase -
  DQL39_RS02650 (NCTC4001_00524) - 496391..497107 (+) 717 WP_002995774.1 pseudouridine synthase -
  DQL39_RS02655 (NCTC4001_00525) coiA 497402..498364 (+) 963 WP_023078855.1 competence protein CoiA Machinery gene
  DQL39_RS02660 (NCTC4001_00526) pepF 498377..500182 (+) 1806 WP_038433275.1 oligoendopeptidase F Regulator
  DQL39_RS02665 (NCTC4001_00527) - 500555..501751 (+) 1197 WP_038433276.1 OFA family MFS transporter -
  DQL39_RS02670 (NCTC4001_00528) - 501817..502524 (+) 708 WP_002984000.1 O-methyltransferase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37829.26 Da        Isoelectric Point: 10.2944

>NTDB_id=1019768 DQL39_RS02655 WP_023078855.1 497402..498364(+) (coiA) [Streptococcus pyogenes strain NCTC4001]
MTKILTALDGRNQLISLVTQPISTKPPFRCPACKSPVRLRQGTIRRPHFAHVQLAHCQFQAENESEEHLTLKAKLYTSLV
RTEAVCIEKYLPELQQIADLWVNDKLALEIQCSPLPVERLKKRTKAYQEKGYPVRWLLGRKLWLNTHLTALQKQFLYFSS
SLGFHLWELDAAANLLRLKYLIHEDLFGKVSYLTKTISLDHNIMEMFRLPYQQEILYSYQKKMTVNLSKRIQRALLARHP
KWLRRQEKAYLSGYNLLMLTTDAFYPQWRPVQSSSGFCQIKGNLRPYYESFKVYYKKEKDKKVQTLFSPKYYVKMDSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=1019768 DQL39_RS02655 WP_023078855.1 497402..498364(+) (coiA) [Streptococcus pyogenes strain NCTC4001]
GTGACAAAAATATTAACCGCTTTAGATGGTAGGAATCAGCTCATTTCGCTAGTAACTCAGCCTATTTCAACGAAACCGCC
TTTTCGTTGCCCAGCTTGCAAATCTCCTGTTCGCTTGCGTCAGGGGACAATTAGACGACCTCATTTTGCCCATGTACAAC
TAGCTCATTGTCAATTCCAAGCAGAAAATGAATCTGAGGAACATTTGACGTTGAAGGCAAAACTTTACACTAGTTTAGTC
AGAACAGAAGCTGTTTGTATTGAAAAATATCTTCCTGAGCTGCAACAGATAGCAGACCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGTCCCTTGCCGGTTGAGCGTCTAAAGAAACGCACCAAAGCCTATCAAGAAAAGGGGTATCCGG
TACGATGGTTACTGGGAAGAAAATTGTGGCTTAACACTCACTTAACTGCTTTGCAAAAACAGTTTCTTTACTTTTCATCT
AGTTTGGGCTTTCATTTGTGGGAGCTGGATGCAGCTGCAAATCTGCTACGTCTCAAATATTTAATCCATGAAGACTTATT
TGGTAAGGTAAGTTACCTAACCAAAACCATTTCTTTAGACCACAATATTATGGAAATGTTTCGGTTACCCTATCAGCAAG
AAATCCTTTATTCTTATCAGAAAAAAATGACTGTGAACCTATCTAAAAGAATACAAAGAGCTCTTTTAGCTAGACACCCG
AAATGGCTACGACGACAAGAAAAGGCTTACTTATCAGGCTATAATTTACTTATGTTAACAACTGATGCTTTTTATCCTCA
ATGGAGACCAGTTCAATCTTCCAGCGGTTTTTGTCAAATTAAAGGAAATCTTCGCCCTTATTATGAAAGTTTTAAAGTCT
ATTATAAAAAAGAAAAGGATAAGAAGGTGCAAACGCTTTTTTCACCAAAATATTATGTTAAAATGGATAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(20-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

43.226

96.875

0.419
  coiA Streptococcus pneumoniae Rx1

41.935

96.875

0.406
  coiA Streptococcus pneumoniae D39

41.935

96.875

0.406
  coiA Streptococcus pneumoniae R6

41.935

96.875

0.406
  coiA Streptococcus pneumoniae TIGR4

41.935

96.875

0.406
  coiA Lactococcus lactis subsp. cremoris KW2

39.329

100

0.403

Multiple sequence alignment