Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DQL37_RS09325 Genome accession   NZ_LS483352
Coordinates   1789239..1789835 (-) Length   198 a.a.
NCBI ID   WP_038432673.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12052     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1784239..1794835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL37_RS09290 (NCTC12052_01834) - 1784298..1784603 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  DQL37_RS09295 (NCTC12052_01835) ruvX 1784615..1785034 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  DQL37_RS09300 (NCTC12052_01836) - 1785031..1785300 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  DQL37_RS09305 (NCTC12052_01837) spx 1785415..1785813 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  DQL37_RS09310 (NCTC12052_01838) recA 1786104..1787240 (-) 1137 WP_002992179.1 recombinase RecA Machinery gene
  DQL37_RS09315 (NCTC12052_01839) cinA 1787329..1788600 (-) 1272 WP_002992182.1 competence/damage-inducible protein A Machinery gene
  DQL37_RS09320 (NCTC12052_01840) - 1788669..1789229 (-) 561 WP_002992183.1 DNA-3-methyladenine glycosylase I -
  DQL37_RS09325 (NCTC12052_01841) ruvA 1789239..1789835 (-) 597 WP_038432673.1 Holliday junction branch migration protein RuvA Machinery gene
  DQL37_RS09330 (NCTC12052_01842) - 1789837..1791057 (-) 1221 WP_002992187.1 MDR family MFS transporter -
  DQL37_RS09335 (NCTC12052_01843) hexB 1791068..1793050 (-) 1983 WP_002992189.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21865.24 Da        Isoelectric Point: 6.8836

>NTDB_id=1019731 DQL37_RS09325 WP_038432673.1 1789239..1789835(-) (ruvA) [Streptococcus pyogenes strain NCTC12052]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVDAPQETGHTKARSNKAGNTQLDEAIEAL
LALGYKAKELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1019731 DQL37_RS09325 WP_038432673.1 1789239..1789835(-) (ruvA) [Streptococcus pyogenes strain NCTC12052]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGATG
CTCCACAAGAGACTGGTCATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAAGCAAAAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATA
CATCAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae R6

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae D39

65.99

99.495

0.657
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424