Detailed information NTG1019729

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AB0R82_RS19230
• Genome accession: NZ_CP160220
• Coordinates: 3723368..3724513 (+)
• Length: 381 a.a.
• NCBI ID: WP_029318693.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain JM553
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3718368..3729513

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0R82_RS19205 (AB0R82_19205)	albF	3718383..3719663 (+)	1281	WP_032722698.1	pitrilysin family protein	-
AB0R82_RS19210 (AB0R82_19210)	albG	3719660..3720361 (+)	702	WP_015250988.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
AB0R82_RS19215 (AB0R82_19215)	ywhL	3720367..3721743 (-)	1377	WP_198878427.1	YncE family protein	-
AB0R82_RS19220 (AB0R82_19220)	ywhK	3721783..3723138 (-)	1356	WP_069322965.1	YncE family protein	-
AB0R82_RS19225 (AB0R82_19225)	-	3723135..3723365 (-)	231	WP_326256832.1	hypothetical protein	-
AB0R82_RS19230 (AB0R82_19230)	rapF	3723368..3724513 (+)	1146	WP_029318693.1	response regulator aspartate phosphatase RapF	Regulator
AB0R82_RS19235 (AB0R82_19235)	phrF	3724497..3724616 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
AB0R82_RS19240 (AB0R82_19240)	ywhH	3724732..3725180 (+)	449	Protein_3730	YbaK/EbsC family protein	-
AB0R82_RS19245 (AB0R82_19245)	speB	3725211..3726083 (-)	873	WP_198878426.1	agmatinase	-
AB0R82_RS19250 (AB0R82_19250)	speE	3726144..3726974 (-)	831	WP_003227543.1	spermidine synthase	-
AB0R82_RS19255 (AB0R82_19255)	pbpG	3727176..3729251 (+)	2076	WP_046664002.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45594.05 Da
• Isoelectric Point: 5.0624

>NTDB_id=1019729 AB0R82_RS19230 WP_029318693.1 3723368..3724513(+) (rapF) [Bacillus subtilis strain JM553]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=1019729 AB0R82_RS19230 WP_029318693.1 3723368..3724513(+) (rapF) [Bacillus subtilis strain JM553]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACATATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATAGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	98.95	100	0.99
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572