Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | AB0R82_RS12305 | Genome accession | NZ_CP160220 |
| Coordinates | 2412355..2412690 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain JM553 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2407355..2417690
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB0R82_RS12285 (AB0R82_12285) | gcvT | 2407947..2409035 (-) | 1089 | WP_015714248.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| AB0R82_RS12290 (AB0R82_12290) | hepAA | 2409477..2411150 (+) | 1674 | WP_198878635.1 | SNF2-related protein | - |
| AB0R82_RS12295 (AB0R82_12295) | yqhG | 2411171..2411965 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| AB0R82_RS12300 (AB0R82_12300) | sinI | 2412148..2412321 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| AB0R82_RS12305 (AB0R82_12305) | sinR | 2412355..2412690 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| AB0R82_RS12310 (AB0R82_12310) | tasA | 2412783..2413568 (-) | 786 | WP_014664586.1 | biofilm matrix protein TasA | - |
| AB0R82_RS12315 (AB0R82_12315) | sipW | 2413632..2414204 (-) | 573 | WP_072692741.1 | signal peptidase I SipW | - |
| AB0R82_RS12320 (AB0R82_12320) | tapA | 2414188..2414949 (-) | 762 | WP_198878634.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AB0R82_RS12325 (AB0R82_12325) | yqzG | 2415221..2415547 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| AB0R82_RS12330 (AB0R82_12330) | spoIITA | 2415589..2415768 (-) | 180 | WP_072175549.1 | YqzE family protein | - |
| AB0R82_RS12335 (AB0R82_12335) | comGG | 2415839..2416213 (-) | 375 | WP_133953114.1 | ComG operon protein ComGG | Machinery gene |
| AB0R82_RS12340 (AB0R82_12340) | comGF | 2416214..2416597 (-) | 384 | WP_032726158.1 | ComG operon protein ComGF | Machinery gene |
| AB0R82_RS12345 (AB0R82_12345) | comGE | 2416623..2416970 (-) | 348 | WP_080529537.1 | ComG operon protein 5 | Machinery gene |
| AB0R82_RS12350 (AB0R82_12350) | comGD | 2416954..2417385 (-) | 432 | WP_080529538.1 | comG operon protein ComGD | Machinery gene |
| AB0R82_RS12355 (AB0R82_12355) | comGC | 2417375..2417671 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=1019696 AB0R82_RS12305 WP_003226345.1 2412355..2412690(+) (sinR) [Bacillus subtilis strain JM553]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=1019696 AB0R82_RS12305 WP_003226345.1 2412355..2412690(+) (sinR) [Bacillus subtilis strain JM553]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |