Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AB0R89_RS11925 Genome accession   NZ_CP160218
Coordinates   2536467..2536775 (-) Length   102 a.a.
NCBI ID   WP_003153087.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP45     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2531467..2541775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R89_RS11875 (AB0R89_11875) sinR 2531630..2531965 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AB0R89_RS11880 (AB0R89_11880) tasA 2532013..2532798 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  AB0R89_RS11885 (AB0R89_11885) sipW 2532863..2533447 (-) 585 WP_015240205.1 signal peptidase I SipW -
  AB0R89_RS11890 (AB0R89_11890) tapA 2533419..2534090 (-) 672 WP_020956077.1 amyloid fiber anchoring/assembly protein TapA -
  AB0R89_RS11895 (AB0R89_11895) - 2534349..2534678 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  AB0R89_RS11900 (AB0R89_11900) - 2534719..2534898 (-) 180 WP_003153093.1 YqzE family protein -
  AB0R89_RS11905 (AB0R89_11905) comGG 2534955..2535332 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB0R89_RS11910 (AB0R89_11910) comGF 2535333..2535833 (-) 501 WP_257474763.1 competence type IV pilus minor pilin ComGF -
  AB0R89_RS11915 (AB0R89_11915) comGE 2535742..2536056 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  AB0R89_RS11920 (AB0R89_11920) comGD 2536040..2536477 (-) 438 WP_043020787.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB0R89_RS11925 (AB0R89_11925) comGC 2536467..2536775 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  AB0R89_RS11930 (AB0R89_11930) comGB 2536780..2537817 (-) 1038 WP_043020786.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB0R89_RS11935 (AB0R89_11935) comGA 2537804..2538874 (-) 1071 WP_043020785.1 competence type IV pilus ATPase ComGA Machinery gene
  AB0R89_RS11940 (AB0R89_11940) - 2539071..2540021 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  AB0R89_RS11945 (AB0R89_11945) - 2540167..2541468 (+) 1302 WP_043020784.1 hemolysin family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11381.28 Da        Isoelectric Point: 6.2096

>NTDB_id=1019548 AB0R89_RS11925 WP_003153087.1 2536467..2536775(-) (comGC) [Bacillus velezensis strain AP45]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILISGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=1019548 AB0R89_RS11925 WP_003153087.1 2536467..2536775(-) (comGC) [Bacillus velezensis strain AP45]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTT
AATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGCCGGATATGAACGATTTACAATCAGAGGGGTATATCAAA
AAGAATACAGCCTGTCCGAATGGTAAACAGATCTTAATTAGTGGCGGAGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

77.083

94.118

0.725
  comGC Staphylococcus aureus MW2

42.708

94.118

0.402
  comGC Staphylococcus aureus N315

42.708

94.118

0.402

Multiple sequence alignment