Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | N900_RS04800 | Genome accession | NZ_CP006947 |
| Coordinates | 1017206..1017517 (+) | Length | 103 a.a. |
| NCBI ID | WP_001166105.1 | Uniprot ID | Q9KQT1 |
| Organism | Vibrio cholerae O1 str. KW3 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1012206..1022517
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N900_RS04785 (N900_04765) | lon | 1012243..1014603 (+) | 2361 | WP_001047611.1 | endopeptidase La | - |
| N900_RS04790 (N900_04770) | - | 1014787..1015059 (+) | 273 | WP_001044516.1 | HU family DNA-binding protein | - |
| N900_RS04795 (N900_04775) | ppiD | 1015212..1017071 (+) | 1860 | WP_000969331.1 | peptidylprolyl isomerase | - |
| N900_RS04800 (N900_04780) | comEA | 1017206..1017517 (+) | 312 | WP_001166105.1 | ComEA family DNA-binding protein | Machinery gene |
| N900_RS04805 (N900_04785) | cmk | 1017700..1018377 (+) | 678 | WP_000094752.1 | (d)CMP kinase | - |
| N900_RS04810 (N900_04790) | rpsA | 1018486..1020156 (+) | 1671 | WP_000140318.1 | 30S ribosomal protein S1 | - |
| N900_RS04815 (N900_04795) | ihfB | 1020444..1020722 (+) | 279 | WP_000167341.1 | integration host factor subunit beta | - |
| N900_RS04820 (N900_04800) | - | 1020861..1021142 (+) | 282 | WP_000691492.1 | LapA family protein | - |
| N900_RS04825 (N900_04805) | lapB | 1021154..1022323 (+) | 1170 | WP_000889971.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 10966.78 Da Isoelectric Point: 5.0506
>NTDB_id=101809 N900_RS04800 WP_001166105.1 1017206..1017517(+) (comEA) [Vibrio cholerae O1 str. KW3]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
Nucleotide
Download Length: 312 bp
>NTDB_id=101809 N900_RS04800 WP_001166105.1 1017206..1017517(+) (comEA) [Vibrio cholerae O1 str. KW3]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| comEA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.766 |
91.262 |
0.573 |
| comEA | Vibrio campbellii strain DS40M4 |
58.333 |
93.204 |
0.544 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.541 |
100 |
0.437 |