Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABX042_RS10965 | Genome accession | NZ_CP160076 |
| Coordinates | 2420998..2421456 (+) | Length | 152 a.a. |
| NCBI ID | WP_078475166.1 | Uniprot ID | - |
| Organism | Snodgrassella alvi strain Amel01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2415998..2426456
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABX042_RS10930 (ABX042_03715) | - | 2416108..2416617 (-) | 510 | WP_172397425.1 | TonB-dependent receptor domain-containing protein | - |
| ABX042_RS10935 (ABX042_03720) | - | 2416589..2417182 (-) | 594 | WP_172397424.1 | TonB-dependent receptor domain-containing protein | - |
| ABX042_RS10940 (ABX042_16810) | - | 2417125..2418327 (-) | 1203 | WP_370578841.1 | FepA family TonB-dependent siderophore receptor | - |
| ABX042_RS10945 (ABX042_03730) | - | 2418695..2419498 (+) | 804 | WP_370578842.1 | hypothetical protein | - |
| ABX042_RS10950 (ABX042_16815) | - | 2419787..2420236 (+) | 450 | WP_370578843.1 | pilin | - |
| ABX042_RS10955 (ABX042_16820) | - | 2420395..2420505 (+) | 111 | Protein_2113 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| ABX042_RS10960 (ABX042_03745) | - | 2420632..2420841 (+) | 210 | WP_078475165.1 | hypothetical protein | - |
| ABX042_RS10965 (ABX042_03750) | pilA | 2420998..2421456 (+) | 459 | WP_078475166.1 | pilin | Machinery gene |
| ABX042_RS10970 (ABX042_16825) | - | 2421980..2422969 (+) | 990 | WP_198223415.1 | sulfatase-like hydrolase/transferase | - |
| ABX042_RS10975 (ABX042_03765) | waaA | 2423155..2424444 (-) | 1290 | WP_370578844.1 | lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 15652.00 Da Isoelectric Point: 9.6578
>NTDB_id=1017700 ABX042_RS10965 WP_078475166.1 2420998..2421456(+) (pilA) [Snodgrassella alvi strain Amel01]
MKAFQKGFTLIELMIVIAIIGILAAIAVPAYSDYIARSQASEASSLAAGLKTQIIDNLQNSNCKSGTNNALDTAIDRQTG
KYGVAEIGGTAATGSISANGATGCTITYTVNTTKVSSSIAGKTLILDVLKNGSLKKNGGTMPDKYVPKAFTI
MKAFQKGFTLIELMIVIAIIGILAAIAVPAYSDYIARSQASEASSLAAGLKTQIIDNLQNSNCKSGTNNALDTAIDRQTG
KYGVAEIGGTAATGSISANGATGCTITYTVNTTKVSSSIAGKTLILDVLKNGSLKKNGGTMPDKYVPKAFTI
Nucleotide
Download Length: 459 bp
>NTDB_id=1017700 ABX042_RS10965 WP_078475166.1 2420998..2421456(+) (pilA) [Snodgrassella alvi strain Amel01]
ATGAAAGCATTCCAAAAAGGTTTTACTTTAATTGAATTGATGATCGTTATTGCAATTATCGGTATTCTTGCTGCAATTGC
TGTACCTGCTTACTCTGATTATATTGCCCGTTCTCAGGCTTCAGAAGCTTCTAGCCTTGCTGCTGGTCTGAAAACTCAGA
TTATTGATAATCTGCAGAATAGTAATTGTAAGTCAGGTACCAATAATGCACTTGATACCGCCATTGACAGACAAACTGGT
AAATATGGTGTAGCAGAAATCGGTGGTACTGCTGCTACCGGCAGTATTTCTGCTAACGGGGCAACTGGCTGTACAATTAC
ATATACAGTAAACACAACCAAAGTATCTTCTTCTATTGCTGGTAAGACTTTGATATTGGATGTATTAAAAAATGGTTCAC
TGAAGAAAAATGGTGGGACTATGCCTGATAAATATGTACCTAAAGCATTCACAATCTAA
ATGAAAGCATTCCAAAAAGGTTTTACTTTAATTGAATTGATGATCGTTATTGCAATTATCGGTATTCTTGCTGCAATTGC
TGTACCTGCTTACTCTGATTATATTGCCCGTTCTCAGGCTTCAGAAGCTTCTAGCCTTGCTGCTGGTCTGAAAACTCAGA
TTATTGATAATCTGCAGAATAGTAATTGTAAGTCAGGTACCAATAATGCACTTGATACCGCCATTGACAGACAAACTGGT
AAATATGGTGTAGCAGAAATCGGTGGTACTGCTGCTACCGGCAGTATTTCTGCTAACGGGGCAACTGGCTGTACAATTAC
ATATACAGTAAACACAACCAAAGTATCTTCTTCTATTGCTGGTAAGACTTTGATATTGGATGTATTAAAAAATGGTTCAC
TGAAGAAAAATGGTGGGACTATGCCTGATAAATATGTACCTAAAGCATTCACAATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter nosocomialis M2 |
52.381 |
96.711 |
0.507 |
| pilA2 | Legionella pneumophila str. Paris |
41.497 |
96.711 |
0.401 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
41.497 |
96.711 |
0.401 |
| pilE | Neisseria gonorrhoeae MS11 |
42.143 |
92.105 |
0.388 |
| pilA | Pseudomonas aeruginosa PAK |
38.926 |
98.026 |
0.382 |