Detailed information NTG1017648

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: ABX024_RS08660
• Genome accession: NZ_CP160074
• Coordinates: 1982679..1983857 (+)
• Length: 392 a.a.
• NCBI ID: WP_367416354.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel08
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1977679..1988857

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX024_RS08640 (ABX024_12060)	-	1978665..1979894 (+)	1230	WP_174831067.1	PilT/PilU family type 4a pilus ATPase	-
ABX024_RS08645 (ABX024_12055)	murU	1980027..1980728 (+)	702	WP_084552602.1	N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU	-
ABX024_RS08650 (ABX024_12050)	ruvC	1980859..1981410 (+)	552	WP_084552603.1	crossover junction endodeoxyribonuclease RuvC	-
ABX024_RS08655 (ABX024_12045)	-	1981508..1982293 (-)	786	WP_367416355.1	DUF2071 domain-containing protein	-
ABX024_RS08660 (ABX024_12040)	dprA	1982679..1983857 (+)	1179	WP_367416354.1	DNA-processing protein DprA	Machinery gene
ABX024_RS08665 (ABX024_12035)	-	1983869..1984327 (+)	459	WP_025329887.1	DUF494 family protein	-
ABX024_RS08670 (ABX024_12030)	topA	1984469..1986763 (+)	2295	WP_367416353.1	type I DNA topoisomerase	-
ABX024_RS08675 (ABX024_12025)	rsmD	1986842..1987414 (+)	573	WP_367416352.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ABX024_RS08680 (ABX024_12020)	-	1987506..1987760 (+)	255	WP_037392355.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 392 a.a.
• Molecular weight: 42291.47 Da
• Isoelectric Point: 6.6279

>NTDB_id=1017648 ABX024_RS08660 WP_367416354.1 1982679..1983857(+) (dprA) [Snodgrassella alvi strain Amel08]
MDTQERLAWIELALTPFVGAETFLRIIKYFGSAQNALSASAAEISPFCQRQVSKYWHSDVAKQATEAAIEWERAHTDARL
LLLADNDFPAMLTKGLTPPPLLFVRGDSQCLHQPALSIVGSRHATPQAMRITHDFAAALARKGVTIISGMASGADTAAHQ
GALQAMGTTVAVWGTGIDRVYPARNKNLATQIAAHGCIISEFPLGTRPSPGNFPRRNRLIAALSQGTLVVEAAIESGSLI
TARLAGEMGREVMAIPGSIDNPLSKGCHALIKQGAKLVENLEDILQECPRLLQKKDLQSYSNRPHLQTDDISKSFTNTDS
SEDLLSVHSSDCILNPMEQQVLDGLGYGIMHPDMLVTALGMAATDVYAHLVTLELGGWITMLPGGCYQRIKS

Nucleotide

• Length: 1179 bp

>NTDB_id=1017648 ABX024_RS08660 WP_367416354.1 1982679..1983857(+) (dprA) [Snodgrassella alvi strain Amel08]
ATGGATACGCAAGAACGCCTAGCCTGGATTGAATTGGCATTAACTCCGTTTGTGGGGGCTGAAACTTTTCTTCGCATAAT
TAAATATTTTGGTTCCGCACAAAATGCTCTTAGTGCATCGGCTGCTGAAATATCGCCTTTTTGCCAACGGCAAGTCAGTA
AGTATTGGCATAGTGATGTAGCAAAACAGGCAACTGAAGCAGCTATAGAATGGGAGCGAGCACATACTGATGCACGTTTA
TTACTACTGGCAGATAATGATTTTCCGGCAATGCTAACTAAGGGTTTAACACCGCCTCCATTATTGTTTGTTCGTGGTGA
TAGCCAGTGTTTGCATCAACCCGCTTTATCAATTGTTGGCAGTCGGCATGCCACACCACAAGCCATGCGCATTACTCATG
ATTTTGCAGCCGCACTAGCACGGAAAGGTGTAACAATTATTTCAGGCATGGCTAGTGGCGCAGATACAGCAGCACATCAG
GGTGCTTTGCAGGCAATGGGTACAACAGTAGCAGTTTGGGGTACAGGTATTGACAGAGTATATCCGGCACGCAATAAAAA
TTTAGCCACACAAATTGCTGCTCATGGCTGTATTATTTCTGAATTTCCCTTGGGTACTCGTCCTTCGCCCGGAAATTTTC
CGCGACGTAACCGCTTGATTGCTGCACTTAGTCAGGGTACGCTGGTAGTTGAAGCCGCAATTGAATCGGGTTCATTGATT
ACTGCAAGACTGGCCGGAGAAATGGGGCGGGAAGTTATGGCGATACCGGGTTCTATTGATAACCCTTTAAGTAAAGGCTG
TCACGCATTAATCAAACAGGGTGCCAAATTAGTAGAAAATCTGGAAGATATTTTGCAGGAATGTCCACGCCTCTTGCAAA
AAAAAGATTTGCAATCATATAGCAATCGTCCTCATCTGCAAACTGATGATATAAGTAAATCATTTACAAATACTGATAGT
TCAGAAGATTTATTATCAGTTCATTCATCAGATTGTATACTTAACCCGATGGAGCAGCAGGTGCTGGACGGACTGGGTTA
CGGCATAATGCATCCGGATATGTTAGTTACAGCACTTGGCATGGCTGCTACAGATGTGTATGCTCATCTCGTGACATTGG
AGCTTGGTGGCTGGATTACCATGCTGCCAGGCGGTTGTTATCAACGCATTAAATCTTGA

Domains

Predicted by InterproScan.

• DprA winged helix domain (DprA_WH) (335-385)

• DNA recombination-mediator protein A (DNA_processg_A) (76-279)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Neisseria meningitidis strain C311	57.96	100	0.594
dprA	Neisseria meningitidis MC58	57.96	100	0.594
dprA	Neisseria gonorrhoeae strain FA1090	57.393	100	0.584
dprA	Neisseria gonorrhoeae MS11	57.143	100	0.582
dprA	Acinetobacter baumannii D1279779	37.467	96.684	0.362