Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABSY19_RS13225 Genome accession   NZ_CP159956
Coordinates   2748065..2749627 (+) Length   520 a.a.
NCBI ID   WP_382163369.1    Uniprot ID   -
Organism   Hydrogenophaga sp. ANAO-22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2743065..2754627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABSY19_RS13200 (ABSY19_13210) - 2743698..2744657 (+) 960 WP_382163362.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  ABSY19_RS13205 (ABSY19_13215) - 2744654..2745175 (-) 522 WP_382163364.1 DinB family protein -
  ABSY19_RS13210 (ABSY19_13220) - 2745234..2745875 (+) 642 WP_382163366.1 TetR/AcrR family transcriptional regulator -
  ABSY19_RS13215 (ABSY19_13225) amt 2745945..2747360 (-) 1416 WP_382163367.1 ammonium transporter -
  ABSY19_RS13220 (ABSY19_13230) - 2747393..2747731 (-) 339 WP_291124926.1 P-II family nitrogen regulator -
  ABSY19_RS13225 (ABSY19_13235) comM 2748065..2749627 (+) 1563 WP_382163369.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABSY19_RS13230 (ABSY19_13240) - 2749624..2750601 (-) 978 WP_382163370.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  ABSY19_RS13235 (ABSY19_13245) - 2750618..2751622 (-) 1005 WP_382163372.1 dihydrodipicolinate synthase family protein -
  ABSY19_RS13240 (ABSY19_13250) - 2751760..2752062 (-) 303 WP_382163373.1 hypothetical protein -
  ABSY19_RS13245 (ABSY19_13255) pobA 2752198..2753376 (+) 1179 WP_382163375.1 4-hydroxybenzoate 3-monooxygenase -
  ABSY19_RS13250 (ABSY19_13260) ligA 2753376..2753789 (+) 414 WP_382163377.1 protocatechuate 4,5-dioxygenase subunit alpha -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 54881.85 Da        Isoelectric Point: 9.2695

>NTDB_id=1016893 ABSY19_RS13225 WP_382163369.1 2748065..2749627(+) (comM) [Hydrogenophaga sp. ANAO-22]
MSLSLVHSRALLGLEARPVCVEVHLANGLPSFTLVGLADTGVKEARERVRSAIANAGLEFPSNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAARLAGWEFAGELSLGGELRPVRGALAMSLAVHRQDTARPTRLVLPPGSAEEAALVPQAQVY
RARHLLDVVARFLPERESDTAPPPPPDEAGWARLAPTARAALPRYPDLIDVKGQVAAKRALEIAAAGGHSLLLVGPPGSG
KSMLAQRFAGLLPPMGTLEALESAAVASLAGRFSLERWGQRPTCAPHHSASAVALVGGGSPPRPGEISMAHQGVLFLDEL
PEFPRSALEALREPLENGHIRISRAAMQSEFPARFQLIGAMNPCPCGFLGHPTRACRDTPDQIARYQGKLSGPLLDRIDL
HVEVPALPPDDLLHGAAGEPSAAVRERVHLARQRAQARQGSTNQTLAGQALDAHVNAEPAALKFLHTAAARLGWSARSTH
RALRVARTIADLSGADAVVTAHVAEAVQYRRVLRQSGAGG

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=1016893 ABSY19_RS13225 WP_382163369.1 2748065..2749627(+) (comM) [Hydrogenophaga sp. ANAO-22]
ATGAGTCTGTCATTGGTGCACAGCCGCGCGCTGCTCGGCCTGGAAGCGCGCCCGGTCTGCGTCGAGGTCCACCTCGCCAA
CGGCCTGCCCAGTTTCACGCTGGTCGGCCTGGCCGACACCGGCGTGAAGGAAGCGCGCGAGCGCGTGCGCTCGGCCATCG
CCAACGCGGGGCTGGAGTTCCCGTCGAACAAGCGCATCACCGTGAACCTGGCGCCGGCCGACCTGCCCAAGGACTCCGGC
CGCTTCGACCTGCCGATCGCCCTGGGCATCCTCGCCGCCAGCGGGCAGATCGACGCGGCGCGGCTGGCCGGCTGGGAGTT
CGCGGGCGAGCTCTCGCTCGGTGGTGAACTGCGGCCGGTGCGCGGCGCGCTGGCCATGAGCCTGGCCGTGCACCGGCAGG
ACACCGCGCGCCCGACCCGCCTGGTGCTGCCGCCGGGCAGCGCCGAGGAAGCGGCGCTGGTGCCGCAGGCGCAGGTCTAC
CGCGCGCGCCACCTGCTCGATGTGGTCGCGCGCTTCCTGCCCGAGCGCGAGTCCGACACGGCGCCACCGCCGCCACCCGA
TGAGGCCGGCTGGGCCCGCCTGGCGCCCACCGCGCGCGCCGCCCTGCCCCGTTACCCCGACCTGATCGACGTCAAGGGCC
AGGTGGCCGCCAAGCGCGCGCTGGAGATCGCGGCGGCCGGCGGCCACAGCCTGTTGCTGGTCGGCCCGCCGGGCTCGGGC
AAGTCCATGCTGGCCCAGCGTTTCGCCGGCCTGCTGCCGCCCATGGGCACGCTGGAGGCGCTGGAGTCCGCCGCCGTGGC
CTCGCTGGCCGGGCGCTTCAGCCTGGAGCGCTGGGGCCAGCGCCCGACCTGCGCGCCCCACCACAGCGCCAGCGCCGTGG
CCCTGGTGGGGGGCGGCTCGCCGCCTCGGCCGGGCGAGATCTCCATGGCGCACCAGGGCGTGCTGTTCCTCGACGAGTTG
CCGGAATTTCCACGCTCGGCGCTGGAGGCCCTGCGCGAGCCGCTGGAGAACGGCCACATCCGCATCTCGCGCGCGGCCAT
GCAGAGCGAGTTCCCGGCACGCTTCCAGCTCATCGGCGCGATGAACCCCTGCCCCTGCGGTTTTCTGGGCCACCCCACGC
GCGCCTGCCGCGACACGCCCGACCAGATCGCGCGTTACCAGGGCAAGCTCAGCGGCCCGCTGCTCGACCGCATCGACCTG
CATGTGGAGGTGCCCGCGCTGCCGCCGGACGACCTGCTGCACGGCGCGGCCGGCGAGCCCAGCGCCGCCGTGCGCGAGCG
CGTGCACCTCGCGCGCCAGCGCGCCCAGGCCCGCCAGGGCAGCACCAACCAGACACTGGCCGGGCAGGCGCTGGACGCGC
ACGTGAACGCCGAACCGGCCGCGCTGAAGTTCCTGCACACCGCCGCCGCGCGCCTGGGCTGGAGCGCGCGCAGCACGCAC
CGCGCCCTGCGCGTGGCGCGCACCATCGCCGACCTCTCGGGCGCGGACGCGGTGGTCACCGCGCACGTGGCGGAGGCGGT
GCAGTACCGGCGCGTGCTGCGCCAGTCCGGCGCCGGCGGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(418-510)

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(207-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.573

100

0.51
  comM Haemophilus influenzae Rd KW20

51.064

99.423

0.508
  comM Vibrio campbellii strain DS40M4

50.769

100

0.508
  comM Legionella pneumophila str. Paris

49.323

99.423

0.49
  comM Legionella pneumophila strain ERS1305867

49.323

99.423

0.49
  comM Glaesserella parasuis strain SC1401

49.318

98.654

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.923

100

0.419

Multiple sequence alignment