Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABU614_RS04405 Genome accession   NZ_CP159925
Coordinates   1012873..1014405 (+) Length   510 a.a.
NCBI ID   WP_363799395.1    Uniprot ID   A0AAU8MV10
Organism   Lysobacter firmicutimachus strain SR10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1007873..1019405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU614_RS04380 (ABU614_04380) - 1008283..1008822 (+) 540 WP_336132740.1 superoxide dismutase family protein -
  ABU614_RS04385 (ABU614_04385) - 1008998..1009978 (-) 981 WP_363800775.1 YeiH family protein -
  ABU614_RS04390 (ABU614_04390) - 1010154..1011068 (+) 915 WP_336132741.1 LysR substrate-binding domain-containing protein -
  ABU614_RS04395 (ABU614_04395) - 1011341..1011679 (-) 339 WP_064746193.1 P-II family nitrogen regulator -
  ABU614_RS04400 (ABU614_04400) - 1012034..1012300 (+) 267 WP_064746192.1 accessory factor UbiK family protein -
  ABU614_RS04405 (ABU614_04405) comM 1012873..1014405 (+) 1533 WP_363799395.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABU614_RS04410 (ABU614_04410) - 1014504..1015367 (-) 864 WP_363799397.1 DMT family transporter -
  ABU614_RS04415 (ABU614_04415) - 1015491..1016879 (+) 1389 WP_363799399.1 PLP-dependent aminotransferase family protein -
  ABU614_RS04420 (ABU614_04420) - 1017149..1017535 (+) 387 WP_363799400.1 hypothetical protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54057.77 Da        Isoelectric Point: 8.6786

>NTDB_id=1016816 ABU614_RS04405 WP_363799395.1 1012873..1014405(+) (comM) [Lysobacter firmicutimachus strain SR10]
MNLALVHSRARSGVRAPAVRVEVHLGGGLPSMSIVGLPEAAVREAKDRVRAAIQCARFEFPQRRITVNLAPADLPKDGGR
YDLAIALGILAASGQIPLDALGECEFLGELGLTGELRAVDGVLPAALAAAAAGRRLIVPAGNGAEAALASRVEARTGRTL
LEVCGQLAGRQALPLAQAVPLQRAPGPDLRDVRGQAQARRALEIAAAGAHHLLLIGPPGCGKTLLASRLPGLLPEASEDE
ALETAAVASVAGRADGRGLDPARWRERPFRAPHHTASAIALIGGGADPRPGEVSLAHHGVLFLDELPEWERRALEVLREP
LESGTVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDSSGRCRCAEEAIRRYRARISGPLLDRIDLHLEVPRLPPAQLRP
DQPEGESSACVRERVLAARERQHARAGQPNARLDQAQTETHCRLTARDQALLERAVEGLQLSARSLHRILRVARTIADLA
GSESIATAHLTEAIGYRRGERGSAHPPQAA

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=1016816 ABU614_RS04405 WP_363799395.1 1012873..1014405(+) (comM) [Lysobacter firmicutimachus strain SR10]
ATGAACCTCGCCCTCGTCCACAGCCGCGCGCGCAGTGGCGTACGCGCGCCCGCGGTGCGGGTCGAAGTGCACCTCGGCGG
CGGGCTGCCGTCGATGTCGATCGTCGGCCTGCCGGAGGCCGCGGTGCGCGAAGCCAAGGACCGGGTGCGCGCGGCGATCC
AATGCGCGCGCTTCGAGTTCCCGCAGCGGCGCATCACCGTCAATCTGGCGCCGGCCGACCTGCCCAAGGACGGCGGCCGT
TACGATCTGGCGATCGCGCTCGGCATCCTCGCCGCCAGCGGCCAGATTCCGCTCGACGCCTTGGGCGAATGCGAGTTCCT
CGGCGAACTCGGCCTGACCGGCGAACTGCGCGCCGTCGACGGCGTGTTGCCGGCGGCGCTGGCCGCCGCGGCCGCTGGCA
GGCGCTTGATCGTGCCGGCAGGCAACGGCGCCGAAGCCGCCTTGGCCAGCCGGGTCGAAGCGCGCACCGGCCGCACGCTG
CTGGAAGTCTGCGGCCAACTCGCCGGCCGGCAAGCCCTGCCGCTGGCGCAGGCCGTGCCGCTGCAGCGCGCACCCGGACC
GGACCTGCGCGACGTGCGCGGCCAGGCGCAGGCGCGGCGCGCGCTGGAGATCGCCGCAGCCGGTGCGCATCACCTGCTGC
TGATCGGTCCGCCCGGCTGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCCGGCCTGTTGCCCGAAGCCAGCGAAGACGAA
GCCCTGGAAACCGCCGCCGTGGCTTCGGTGGCCGGCCGCGCGGACGGTCGCGGCCTGGACCCGGCGCGCTGGCGCGAGCG
CCCGTTCCGCGCCCCGCATCACACCGCCAGCGCGATCGCGTTGATCGGCGGCGGCGCCGACCCGCGTCCCGGCGAGGTCT
CGCTGGCCCACCATGGCGTGTTGTTCCTCGACGAATTGCCCGAATGGGAACGGCGCGCGCTGGAAGTGCTGCGCGAACCG
CTGGAATCGGGCACGGTGACGGTGTCGCGCGCGGCGCGCAGCGCCGAGTTTCCGGCACGGTTCCAATTGGTCGCGGCGAT
GAATCCCTGCCCATGCGGCTGGGCCGGCGACAGCAGCGGCCGTTGCCGCTGCGCCGAGGAAGCGATCCGCCGCTACCGCG
CGCGCATCTCCGGGCCGCTGCTCGACCGCATCGACCTGCACCTGGAGGTGCCGCGACTGCCGCCGGCGCAACTGCGCCCC
GACCAGCCCGAAGGCGAGAGCAGCGCCTGCGTGCGCGAACGCGTGCTCGCCGCGCGCGAGCGCCAGCACGCGCGCGCCGG
CCAGCCCAACGCCCGCCTCGACCAAGCCCAGACCGAAACGCATTGCCGCCTGACCGCGCGCGATCAGGCCCTGCTCGAGC
GCGCGGTCGAAGGGCTGCAATTGTCGGCGCGGTCGCTGCACCGGATCCTGCGTGTCGCCCGCACCATCGCCGACCTCGCC
GGCAGCGAAAGCATCGCCACCGCGCACCTGACCGAAGCGATCGGCTACCGGCGCGGCGAACGCGGCAGCGCCCATCCGCC
ACAGGCCGCGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.268

98.627

0.545
  comM Vibrio campbellii strain DS40M4

54.473

98.627

0.537
  comM Haemophilus influenzae Rd KW20

53.77

98.824

0.531
  comM Glaesserella parasuis strain SC1401

52.953

99.608

0.527
  comM Legionella pneumophila str. Paris

49.705

99.804

0.496
  comM Legionella pneumophila strain ERS1305867

49.705

99.804

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.141

100

0.443

Multiple sequence alignment