Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ABWT76_RS15085 Genome accession   NZ_CP159837
Coordinates   3565810..3566175 (-) Length   121 a.a.
NCBI ID   WP_054464306.1    Uniprot ID   A0A0M1JYE0
Organism   Planktothricoides raciborskii GIHE-MW2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3560810..3571175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWT76_RS15075 (ABWT76_002994) - 3561014..3562030 (-) 1017 WP_354636367.1 J domain-containing protein -
  ABWT76_RS15080 (ABWT76_002995) dnaK 3562823..3564730 (-) 1908 Protein_2978 molecular chaperone DnaK -
  ABWT76_RS15085 (ABWT76_002996) pilH 3565810..3566175 (-) 366 WP_054464306.1 PleD family two-component system response regulator Machinery gene
  ABWT76_RS15090 (ABWT76_002997) pds 3567016..3568470 (+) 1455 WP_054464307.1 15-cis-phytoene desaturase -
  ABWT76_RS15095 (ABWT76_002998) crtB 3568621..3569550 (+) 930 WP_054464308.1 15-cis-phytoene synthase CrtB -
  ABWT76_RS15100 (ABWT76_002999) - 3569864..3570340 (-) 477 WP_054464309.1 RNA-binding protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13739.03 Da        Isoelectric Point: 4.9331

>NTDB_id=1016114 ABWT76_RS15085 WP_054464306.1 3565810..3566175(-) (pilH) [Planktothricoides raciborskii GIHE-MW2]
MNTILIVDDSATVREMVSEILKKSGLNVIEAINGDEAKKEIQKQVPDLVVTDIVMPEMNGYELCRWIKNTAEFQSIPVIM
CTSKGEDFDRYWGMKQGADAYIAKPFRPTELLTTIKQLLKK

Nucleotide


Download         Length: 366 bp        

>NTDB_id=1016114 ABWT76_RS15085 WP_054464306.1 3565810..3566175(-) (pilH) [Planktothricoides raciborskii GIHE-MW2]
ATGAATACAATTCTGATTGTAGACGATAGTGCAACGGTACGCGAAATGGTATCAGAAATATTGAAAAAGAGTGGCCTCAA
TGTGATTGAGGCAATCAACGGCGACGAAGCTAAAAAAGAAATTCAAAAGCAAGTTCCAGATTTAGTTGTCACCGATATTG
TGATGCCGGAAATGAATGGCTATGAACTGTGTCGGTGGATTAAAAATACTGCGGAATTTCAAAGTATTCCCGTGATTATG
TGTACCAGTAAAGGTGAGGATTTTGATCGATATTGGGGTATGAAACAAGGAGCTGATGCCTATATTGCTAAACCATTTCG
GCCTACAGAACTGCTGACCACTATAAAGCAATTGCTAAAAAAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1JYE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

61.667

99.174

0.612
  pilL-C Synechocystis sp. PCC 6803

42.373

97.521

0.413
  pilG Acinetobacter baumannii strain A118

42.478

93.388

0.397
  scnR Streptococcus mutans UA159

37.815

98.347

0.372
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364

Multiple sequence alignment