Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | ABWT76_RS12285 | Genome accession | NZ_CP159837 |
| Coordinates | 2880107..2880472 (-) | Length | 121 a.a. |
| NCBI ID | WP_054466965.1 | Uniprot ID | A0A0M1JRL7 |
| Organism | Planktothricoides raciborskii GIHE-MW2 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2875107..2885472
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABWT76_RS12255 (ABWT76_002432) | - | 2875195..2877117 (+) | 1923 | WP_054466960.1 | adenylate/guanylate cyclase domain-containing protein | - |
| ABWT76_RS12260 (ABWT76_002433) | - | 2877213..2877908 (+) | 696 | WP_231636810.1 | uracil-DNA glycosylase family protein | - |
| ABWT76_RS12265 (ABWT76_002434) | aat | 2878063..2878662 (-) | 600 | WP_054466961.1 | leucyl/phenylalanyl-tRNA--protein transferase | - |
| ABWT76_RS12270 (ABWT76_002435) | - | 2878822..2879151 (+) | 330 | WP_054466962.1 | hypothetical protein | - |
| ABWT76_RS12275 (ABWT76_002436) | rpsN | 2879336..2879638 (-) | 303 | WP_054466963.1 | 30S ribosomal protein S14 | - |
| ABWT76_RS12280 (ABWT76_002437) | - | 2879607..2879924 (-) | 318 | WP_354636190.1 | hypothetical protein | - |
| ABWT76_RS12285 (ABWT76_002438) | pilH | 2880107..2880472 (-) | 366 | WP_054466965.1 | response regulator transcription factor | Machinery gene |
| ABWT76_RS12290 (ABWT76_002439) | - | 2880679..2881062 (-) | 384 | WP_054466966.1 | translation initiation factor | - |
| ABWT76_RS12295 (ABWT76_002440) | trpB | 2881279..2882532 (+) | 1254 | WP_054466967.1 | tryptophan synthase subunit beta | - |
| ABWT76_RS12300 (ABWT76_002441) | - | 2882643..2883272 (+) | 630 | WP_354636191.1 | ribonuclease H-like domain-containing protein | - |
| ABWT76_RS12305 (ABWT76_002442) | - | 2883445..2885043 (+) | 1599 | WP_054466969.1 | glycoside hydrolase family 3 N-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 121 a.a. Molecular weight: 13538.94 Da Isoelectric Point: 8.2632
>NTDB_id=1016112 ABWT76_RS12285 WP_054466965.1 2880107..2880472(-) (pilH) [Planktothricoides raciborskii GIHE-MW2]
MSTVLLVEDSPTQQEMIAGILQSRGLKVSLANDGVEALEKIKASSPDLVVLDIIMPKMNGYEVCRHIKSNPKTQKIPVIM
CSSKSEEFDRYWGMKQGADAYICKPFHPKELLGTIKQFLLK
MSTVLLVEDSPTQQEMIAGILQSRGLKVSLANDGVEALEKIKASSPDLVVLDIIMPKMNGYEVCRHIKSNPKTQKIPVIM
CSSKSEEFDRYWGMKQGADAYICKPFHPKELLGTIKQFLLK
Nucleotide
Download Length: 366 bp
>NTDB_id=1016112 ABWT76_RS12285 WP_054466965.1 2880107..2880472(-) (pilH) [Planktothricoides raciborskii GIHE-MW2]
ATGAGTACAGTCCTGCTGGTTGAAGATAGTCCCACTCAACAAGAAATGATTGCCGGAATCCTGCAAAGTCGAGGATTAAA
GGTTTCCCTGGCCAATGATGGGGTAGAAGCCCTAGAAAAAATTAAAGCCAGTTCCCCAGATTTGGTGGTTTTAGACATTA
TTATGCCTAAAATGAACGGCTATGAAGTCTGCCGTCATATTAAGTCTAATCCTAAGACTCAGAAGATTCCGGTGATTATG
TGTTCTTCTAAGTCAGAAGAATTCGACCGATATTGGGGGATGAAACAAGGGGCAGATGCTTATATTTGCAAGCCATTTCA
CCCTAAAGAACTGTTAGGAACTATTAAGCAATTTTTGCTCAAATAA
ATGAGTACAGTCCTGCTGGTTGAAGATAGTCCCACTCAACAAGAAATGATTGCCGGAATCCTGCAAAGTCGAGGATTAAA
GGTTTCCCTGGCCAATGATGGGGTAGAAGCCCTAGAAAAAATTAAAGCCAGTTCCCCAGATTTGGTGGTTTTAGACATTA
TTATGCCTAAAATGAACGGCTATGAAGTCTGCCGTCATATTAAGTCTAATCCTAAGACTCAGAAGATTCCGGTGATTATG
TGTTCTTCTAAGTCAGAAGAATTCGACCGATATTGGGGGATGAAACAAGGGGCAGATGCTTATATTTGCAAGCCATTTCA
CCCTAAAGAACTGTTAGGAACTATTAAGCAATTTTTGCTCAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
72.269 |
98.347 |
0.711 |
| pilG | Acinetobacter baumannii strain A118 |
43.86 |
94.215 |
0.413 |
| vicR | Streptococcus mutans UA159 |
37.19 |
100 |
0.372 |
| micA | Streptococcus pneumoniae Cp1015 |
36.364 |
100 |
0.364 |
| scnR | Streptococcus mutans UA159 |
40.367 |
90.083 |
0.364 |