Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABXR87_RS17520 Genome accession   NZ_CP159763
Coordinates   3692546..3694033 (+) Length   495 a.a.
NCBI ID   WP_000010449.1    Uniprot ID   A0A3R9T6T3
Organism   Acinetobacter baumannii strain AB11-AUFP     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3687546..3699033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXR87_RS17495 (ABXR87_17495) ribD 3688462..3689547 (-) 1086 WP_001292517.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ABXR87_RS17500 (ABXR87_17500) nrdR 3689563..3690021 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  ABXR87_RS17505 (ABXR87_17505) - 3690180..3691577 (-) 1398 WP_000738520.1 ammonium transporter -
  ABXR87_RS17510 (ABXR87_17510) glnK 3691635..3691973 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  ABXR87_RS17515 (ABXR87_17515) - 3692253..3692480 (+) 228 WP_000894500.1 accessory factor UbiK family protein -
  ABXR87_RS17520 (ABXR87_17520) comM 3692546..3694033 (+) 1488 WP_000010449.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABXR87_RS17525 (ABXR87_17525) - 3694048..3695482 (-) 1435 Protein_3421 PLP-dependent aminotransferase family protein -
  ABXR87_RS17530 (ABXR87_17530) - 3695594..3696370 (+) 777 WP_000845031.1 aldolase -
  ABXR87_RS17535 (ABXR87_17535) - 3696386..3697264 (+) 879 WP_002067982.1 dihydrodipicolinate synthase family protein -
  ABXR87_RS17540 (ABXR87_17540) - 3697307..3698119 (-) 813 WP_000975212.1 TorF family putative porin -
  ABXR87_RS17545 (ABXR87_17545) - 3698176..3698346 (-) 171 WP_000492278.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54537.49 Da        Isoelectric Point: 7.4014

>NTDB_id=1015745 ABXR87_RS17520 WP_000010449.1 3692546..3694033(+) (comM) [Acinetobacter baumannii strain AB11-AUFP]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVKHL
KEVCEHFLGTQKLAYAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQDCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1015745 ABXR87_RS17520 WP_000010449.1 3692546..3694033(+) (comM) [Acinetobacter baumannii strain AB11-AUFP]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCTGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTCCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTAGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCCGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCAGTTAAACATTTA
AAAGAGGTATGCGAGCACTTTTTAGGCACACAAAAGCTAGCTTATGCGCAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGACCTTGCAGATGTTAAAGGTCAGCTACGGCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACACTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCTTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCCAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTTCCCGAGTTTGACAGAAAGGTTTTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCACCAGAAAGTATTAAGCGCTATCAAAACCGCATATCGGGAC
CATTACTTGACCGCATCGATTTACATATTGATGTCCCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACACCTGCAGAA
GATTCTACAACTGTACGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT
CTCACCAAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCCCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGCGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCCCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9T6T3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.301

100

0.507
  comM Haemophilus influenzae Rd KW20

49.499

100

0.499
  comM Legionella pneumophila strain ERS1305867

48.996

100

0.493
  comM Legionella pneumophila str. Paris

48.996

100

0.493
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.6

100

0.471

Multiple sequence alignment