Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABXR87_RS13905 Genome accession   NZ_CP159763
Coordinates   2951231..2951332 (-) Length   33 a.a.
NCBI ID   WP_223234051.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB11-AUFP     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2946231..2956332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXR87_RS13890 (ABXR87_13890) - 2946648..2947586 (-) 939 WP_302563935.1 hypothetical protein -
  ABXR87_RS13895 (ABXR87_13895) - 2948773..2949462 (-) 690 WP_000730703.1 hypothetical protein -
  ABXR87_RS13900 (ABXR87_13900) fic 2949837..2950946 (-) 1110 WP_000084810.1 protein adenylyltransferase Fic -
  ABXR87_RS13905 (ABXR87_13905) ssb 2951231..2951332 (-) 102 WP_223234051.1 single-stranded DNA-binding protein Machinery gene
  ABXR87_RS13910 (ABXR87_13910) - 2951371..2952813 (-) 1443 WP_000003536.1 hypothetical protein -
  ABXR87_RS13915 (ABXR87_13915) - 2952931..2953147 (-) 217 Protein_2726 single-stranded DNA-binding protein -
  ABXR87_RS13920 (ABXR87_13920) - 2953480..2955945 (-) 2466 WP_002069489.1 DUF927 domain-containing protein -
  ABXR87_RS13925 (ABXR87_13925) - 2955956..2956234 (-) 279 WP_001064707.1 hypothetical protein -

Sequence

Protein


Download         Length: 33 a.a.        Molecular weight: 3908.49 Da        Isoelectric Point: 6.2176

>NTDB_id=1015728 ABXR87_RS13905 WP_223234051.1 2951231..2951332(-) (ssb) [Acinetobacter baumannii strain AB11-AUFP]
MYIEGSLRTRKWKDSKGAEKEITEIRADELQLL

Nucleotide


Download         Length: 102 bp        

>NTDB_id=1015728 ABXR87_RS13905 WP_223234051.1 2951231..2951332(-) (ssb) [Acinetobacter baumannii strain AB11-AUFP]
GTGTATATCGAAGGCTCATTGCGTACAAGGAAATGGAAGGACAGCAAAGGGGCGGAAAAGGAAATAACCGAGATTCGAGC
AGATGAGCTGCAATTGCTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.515

100

0.515
  ssb Vibrio cholerae strain A1552

52

75.758

0.394
  ssbA Streptococcus mutans UA159

38.71

93.939

0.364
  ssbB Streptococcus sobrinus strain NIDR 6715-7

38.71

93.939

0.364
  ssbB Lactococcus lactis subsp. cremoris KW2

38.71

93.939

0.364

Multiple sequence alignment