Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABV520_RS08720 Genome accession   NZ_CP159584
Coordinates   1948273..1949451 (-) Length   392 a.a.
NCBI ID   WP_267409011.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer03     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1943273..1954451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV520_RS08700 (ABV520_07625) - 1944375..1944629 (-) 255 WP_267409014.1 YfhL family 4Fe-4S dicluster ferredoxin -
  ABV520_RS08705 (ABV520_07630) rsmD 1944718..1945290 (-) 573 WP_367417848.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ABV520_RS08710 (ABV520_17310) topA 1945369..1947663 (-) 2295 WP_370386583.1 type I DNA topoisomerase -
  ABV520_RS08715 (ABV520_07660) - 1947803..1948261 (-) 459 WP_267392027.1 DUF494 family protein -
  ABV520_RS08720 (ABV520_07665) dprA 1948273..1949451 (-) 1179 WP_267409011.1 DNA-processing protein DprA Machinery gene
  ABV520_RS08725 (ABV520_07670) - 1949775..1950560 (+) 786 WP_370386584.1 DUF2071 domain-containing protein -
  ABV520_RS08730 (ABV520_07675) ruvC 1950670..1951221 (-) 552 WP_267392024.1 crossover junction endodeoxyribonuclease RuvC -
  ABV520_RS08735 (ABV520_07680) murU 1951342..1952046 (-) 705 WP_370386585.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  ABV520_RS08740 (ABV520_07685) - 1952152..1953360 (-) 1209 WP_370387142.1 PilT/PilU family type 4a pilus ATPase -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 42524.80 Da        Isoelectric Point: 6.1301

>NTDB_id=1014695 ABV520_RS08720 WP_267409011.1 1948273..1949451(-) (dprA) [Snodgrassella alvi strain Acer03]
MNELERYAWIELALTPYIGSETFLRILKHFGSAQIALAADVEEIKPFLIRSRAGQYWRSEEARKAAEAALQWEQKHENAR
LLLLAENDYPPLLSEGLTPPPLLFIRGNIHYLQQPSLAIVGSRHATPQAMRIARDFAKALAQKEIAVISGMADGIDTAAH
QGALLGKGTTVAVWGTGIDRVYPARNKSLAAEIAEHGCIISEFPLGTRSLAGNFPRRNRLIAALSQGTLVIEAATESGSL
ITARLAGEMGREVMAIPGSIDNPLSKGCHALIKQGAKLVENLDDILHECPFLLQKTQVHSYSHQSSQFIQSDTPVLLVEE
TEDLLLDKTAASALTSPEKQILDGLGYGIVHPDTLVSTLGIPATDVYANLMALELGGWITALPGGCYQRIKS

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=1014695 ABV520_RS08720 WP_267409011.1 1948273..1949451(-) (dprA) [Snodgrassella alvi strain Acer03]
ATGAATGAGCTCGAGCGCTATGCTTGGATTGAGCTGGCATTAACACCCTATATTGGCAGTGAAACATTTTTACGTATCTT
AAAACATTTTGGTTCGGCACAAATCGCTTTGGCCGCAGATGTGGAAGAAATTAAACCTTTTCTGATTCGTTCTCGGGCCG
GTCAATACTGGCGCAGTGAGGAGGCAAGAAAAGCAGCTGAAGCCGCCCTGCAATGGGAGCAAAAGCATGAAAATGCACGC
TTATTATTGCTGGCTGAAAATGATTATCCACCACTGCTTTCTGAAGGTTTGACACCGCCTCCATTATTATTTATTCGTGG
TAACATCCACTATCTGCAACAGCCCTCGTTGGCTATTGTTGGCAGCCGACATGCTACGCCACAAGCAATGCGTATTGCCC
GTGATTTTGCCAAGGCATTAGCACAAAAAGAAATTGCTGTGATATCAGGCATGGCTGATGGTATAGATACCGCAGCCCAT
CAAGGTGCTTTACTTGGCAAAGGTACTACTGTTGCCGTCTGGGGCACAGGAATAGATCGCGTGTATCCGGCACGCAACAA
ATCATTGGCCGCTGAAATTGCCGAACATGGCTGTATAATTTCAGAATTTCCACTAGGCACACGTTCTTTGGCAGGTAATT
TCCCTCGTCGCAATCGCCTGATTGCAGCCCTCAGCCAAGGTACCCTAGTGATAGAGGCTGCAACCGAATCTGGCTCCCTG
ATTACTGCGCGATTGGCCGGTGAAATGGGTCGTGAAGTTATGGCAATACCTGGTTCGATTGATAACCCATTAAGCAAAGG
TTGTCATGCATTGATAAAACAGGGTGCCAAACTGGTTGAAAATCTAGATGATATACTTCATGAGTGCCCTTTCCTCTTGC
AAAAAACGCAAGTGCATTCATATAGCCATCAATCTTCACAATTTATTCAATCAGATACACCTGTACTGCTTGTTGAAGAG
ACTGAAGATCTCTTATTAGACAAAACAGCTGCATCAGCACTCACATCGCCGGAGAAACAAATTCTGGATGGATTAGGTTA
TGGTATCGTACATCCAGATACACTGGTCTCAACACTTGGCATCCCTGCTACAGATGTGTATGCTAATCTTATGGCACTGG
AACTAGGTGGCTGGATTACCGCACTGCCGGGCGGTTGTTATCAACGCATTAAATCTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-280)

DprA winged helix domain (DprA_WH)

(329-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

58.293

100

0.61
  dprA Neisseria meningitidis MC58

58.293

100

0.61
  dprA Neisseria gonorrhoeae strain FA1090

59.204

100

0.607
  dprA Neisseria gonorrhoeae MS11

58.706

100

0.602
  dprA Vibrio cholerae strain A1552

38.501

98.724

0.38
  dprA Vibrio campbellii strain DS40M4

37.629

98.98

0.372

Multiple sequence alignment