Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABV408_RS01800 Genome accession   NZ_CP159578
Coordinates   379205..379813 (+) Length   202 a.a.
NCBI ID   WP_353980798.1    Uniprot ID   -
Organism   Salinicola endophyticus strain HNIBRBA4755     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 374205..384813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV408_RS01790 (ABV408_01790) uvrA 374721..377579 (-) 2859 WP_353980796.1 excinuclease ABC subunit UvrA -
  ABV408_RS01795 (ABV408_01795) - 377786..379168 (+) 1383 WP_353980797.1 MFS transporter -
  ABV408_RS01800 (ABV408_01800) ssb 379205..379813 (+) 609 WP_353980798.1 single-stranded DNA-binding protein Machinery gene
  ABV408_RS01805 (ABV408_01805) - 380188..382239 (+) 2052 WP_353980799.1 OPT family oligopeptide transporter -
  ABV408_RS01810 (ABV408_01810) - 382259..383131 (-) 873 WP_353980800.1 SMP-30/gluconolactonase/LRE family protein -
  ABV408_RS01815 (ABV408_01815) - 383441..384319 (+) 879 WP_353980801.1 sugar nucleotide-binding protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22305.29 Da        Isoelectric Point: 5.2238

>NTDB_id=1014602 ABV408_RS01800 WP_353980798.1 379205..379813(+) (ssb) [Salinicola endophyticus strain HNIBRBA4755]
MARGVNKVILIGNLGQDPEVRFLPSGNPVCNLRIATTDTWTDRQSGQRQERTEWHSVVLFNKLAEIAQQYVKKGSRIYIE
GRLQTRKWQGQDGQDRYSTEIVGNDMQMLDSRSGQGGGDYNQSQYGGAPQQPQGGYAQQQPAPAQQGGYGQQQPAPAQQG
GYGNQPQRPPQNQPAPQPNQQNANYGAPNPGSFDDFDDEIPF

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1014602 ABV408_RS01800 WP_353980798.1 379205..379813(+) (ssb) [Salinicola endophyticus strain HNIBRBA4755]
ATGGCCCGAGGTGTGAACAAAGTCATCCTGATCGGCAACCTGGGACAGGATCCGGAAGTCCGCTTCCTGCCGTCGGGCAA
TCCGGTGTGCAACCTGCGCATCGCGACCACCGATACCTGGACCGACCGTCAGAGCGGCCAGCGTCAGGAGCGTACCGAAT
GGCACAGCGTGGTGCTGTTCAACAAGCTGGCGGAGATCGCCCAGCAGTACGTCAAGAAGGGCTCGCGGATCTATATCGAA
GGGCGCCTGCAGACCCGCAAGTGGCAGGGGCAGGACGGCCAGGATCGCTACTCCACCGAGATCGTCGGCAACGACATGCA
GATGCTCGACTCGCGCAGCGGTCAGGGCGGTGGTGATTATAACCAGAGCCAGTATGGCGGTGCGCCGCAGCAGCCCCAGG
GTGGCTATGCTCAGCAGCAGCCCGCCCCGGCCCAGCAGGGTGGCTATGGCCAGCAGCAGCCGGCGCCGGCTCAGCAGGGC
GGCTACGGTAACCAGCCCCAGCGTCCGCCGCAGAACCAGCCGGCGCCGCAGCCCAACCAGCAGAATGCCAACTACGGCGC
GCCGAATCCGGGCAGCTTCGACGATTTCGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.456

100

0.525
  ssb Neisseria gonorrhoeae MS11

48.756

99.505

0.485
  ssb Neisseria meningitidis MC58

48.259

99.505

0.48
  ssb Glaesserella parasuis strain SC1401

47.761

99.505

0.475

Multiple sequence alignment