Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABV298_RS10615 Genome accession   NZ_CP159289
Coordinates   2385714..2386205 (-) Length   163 a.a.
NCBI ID   WP_353722094.1    Uniprot ID   A0AAU8FSL0
Organism   Dyadobacter sp. 676     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2380714..2391205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV298_RS10595 (ABV298_10595) - 2381090..2381884 (+) 795 WP_353722090.1 phosphosulfolactate synthase -
  ABV298_RS10600 (ABV298_10600) - 2381927..2382583 (+) 657 WP_353722091.1 DedA family protein -
  ABV298_RS10605 (ABV298_10605) guaB 2382723..2384195 (-) 1473 WP_353722092.1 IMP dehydrogenase -
  ABV298_RS10610 (ABV298_10610) - 2384271..2385587 (-) 1317 WP_353722093.1 transporter associated domain-containing protein -
  ABV298_RS10615 (ABV298_10615) ssb 2385714..2386205 (-) 492 WP_353722094.1 single-stranded DNA-binding protein Machinery gene
  ABV298_RS10620 (ABV298_10620) - 2386269..2387474 (-) 1206 WP_353722095.1 Gfo/Idh/MocA family oxidoreductase -
  ABV298_RS10625 (ABV298_10625) - 2387634..2388491 (-) 858 WP_353722096.1 phytanoyl-CoA dioxygenase family protein -
  ABV298_RS10630 (ABV298_10630) - 2388589..2389359 (-) 771 WP_353722097.1 NUDIX domain-containing protein -
  ABV298_RS10635 (ABV298_10635) - 2389367..2389672 (-) 306 Protein_2112 A/G-specific adenine glycosylase -
  ABV298_RS10640 (ABV298_10640) - 2389833..2390138 (+) 306 WP_015813879.1 HU family DNA-binding protein -
  ABV298_RS10645 (ABV298_10645) - 2390169..2390486 (+) 318 WP_353722098.1 hypothetical protein -
  ABV298_RS10650 (ABV298_10650) - 2390464..2391021 (+) 558 WP_353722099.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17519.17 Da        Isoelectric Point: 4.9658

>NTDB_id=1013088 ABV298_RS10615 WP_353722094.1 2385714..2386205(-) (ssb) [Dyadobacter sp. 676]
MAGSVNKVILIGNLGSDPEVRYLESGSAVAKFNIATTETYTNKNGERVDNTEWHRIELWEGLAKVAEKYLKKGNQVYIEG
RIRTDTWTDKEGQQRTGVTIRASSMTLLGGPSSNSGGDYNQGGNQGGYQQSGNAPRGNNAPRPSDPVPPSMAAGNGDDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1013088 ABV298_RS10615 WP_353722094.1 2385714..2386205(-) (ssb) [Dyadobacter sp. 676]
ATGGCAGGAAGTGTTAACAAAGTAATTCTAATCGGTAACCTGGGCAGCGATCCGGAGGTCCGGTACCTCGAAAGCGGATC
AGCCGTAGCGAAGTTCAACATCGCGACGACCGAGACCTATACGAATAAAAACGGTGAGCGTGTCGATAATACCGAATGGC
ACCGCATCGAGCTTTGGGAAGGGCTGGCGAAAGTGGCCGAGAAATACCTTAAAAAAGGTAACCAGGTGTATATTGAAGGC
CGTATCCGCACGGACACGTGGACGGACAAGGAAGGCCAGCAGCGTACCGGCGTAACCATCCGTGCCAGCAGTATGACGCT
GCTTGGCGGGCCGAGCTCCAACTCGGGTGGTGACTATAACCAGGGAGGTAACCAGGGCGGCTACCAGCAATCGGGCAATG
CACCGCGCGGCAACAATGCGCCGCGGCCGTCCGATCCGGTGCCGCCGTCCATGGCGGCAGGCAACGGTGACGACGACGAT
CTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.665

100

0.485
  ssb Neisseria gonorrhoeae MS11

44.509

100

0.472
  ssb Neisseria meningitidis MC58

44.509

100

0.472
  ssb Glaesserella parasuis strain SC1401

41.398

100

0.472

Multiple sequence alignment