Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABNQ24_RS15650 | Genome accession | NZ_CP158968 |
| Coordinates | 3250070..3250591 (-) | Length | 173 a.a. |
| NCBI ID | WP_028852632.1 | Uniprot ID | A0A454TT80 |
| Organism | Ralstonia pseudosolanacearum strain EN1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3245070..3255591
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABNQ24_RS15635 (ABNQ24_15605) | moaC | 3246780..3247256 (+) | 477 | WP_011000519.1 | cyclic pyranopterin monophosphate synthase MoaC | - |
| ABNQ24_RS15640 (ABNQ24_15610) | - | 3247484..3249217 (-) | 1734 | WP_089190455.1 | Wzy polymerase domain-containing protein | - |
| ABNQ24_RS15645 (ABNQ24_15615) | pilA | 3249294..3249803 (-) | 510 | WP_020831292.1 | pilin | Machinery gene |
| ABNQ24_RS15650 (ABNQ24_15620) | pilA | 3250070..3250591 (-) | 522 | WP_028852632.1 | pilin | Machinery gene |
| ABNQ24_RS15655 (ABNQ24_15625) | - | 3250785..3251483 (-) | 699 | WP_089190456.1 | TerC family protein | - |
| ABNQ24_RS15660 (ABNQ24_15630) | sucD | 3251633..3252514 (-) | 882 | WP_011000514.1 | succinate--CoA ligase subunit alpha | - |
| ABNQ24_RS15665 (ABNQ24_15635) | sucC | 3252599..3253765 (-) | 1167 | WP_011000513.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ABNQ24_RS15670 (ABNQ24_15640) | - | 3253832..3254458 (-) | 627 | WP_029240215.1 | DUF2889 domain-containing protein | - |
| ABNQ24_RS15675 (ABNQ24_15645) | recX | 3254733..3255212 (-) | 480 | WP_020831287.1 | recombination regulator RecX | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 17776.47 Da Isoelectric Point: 10.2418
>NTDB_id=1012104 ABNQ24_RS15650 WP_028852632.1 3250070..3250591(-) (pilA) [Ralstonia pseudosolanacearum strain EN1]
MASKHSRNRRRGQRGFTLIELMIVVAIIGILAALAIPAYQDYTIRSRVIEGLALAGQAKALVVENAANAQSSLSLGSASL
PASKNVSALNIDSSTGEIAVVYASAVTGAGANTLVLTPYSGSSSVFGNLQAGSTPPAMVLWVCAAAGKSMPVNTVTQRTT
ATLPPKYAPSECR
MASKHSRNRRRGQRGFTLIELMIVVAIIGILAALAIPAYQDYTIRSRVIEGLALAGQAKALVVENAANAQSSLSLGSASL
PASKNVSALNIDSSTGEIAVVYASAVTGAGANTLVLTPYSGSSSVFGNLQAGSTPPAMVLWVCAAAGKSMPVNTVTQRTT
ATLPPKYAPSECR
Nucleotide
Download Length: 522 bp
>NTDB_id=1012104 ABNQ24_RS15650 WP_028852632.1 3250070..3250591(-) (pilA) [Ralstonia pseudosolanacearum strain EN1]
ATGGCATCGAAGCACAGCAGGAACAGGCGGCGCGGCCAGCGCGGCTTTACATTGATCGAGTTGATGATCGTGGTGGCGAT
CATCGGGATTTTGGCGGCGCTGGCGATTCCGGCGTATCAGGACTACACGATCCGGTCGCGTGTGATCGAGGGGCTGGCAC
TGGCAGGGCAAGCCAAGGCGCTGGTGGTTGAAAATGCCGCCAACGCACAGAGTAGCCTGTCACTCGGTTCCGCATCGTTG
CCGGCCAGCAAGAACGTCAGTGCTCTGAATATTGATTCGTCCACCGGCGAAATCGCGGTGGTCTATGCATCCGCTGTTAC
GGGAGCGGGGGCGAATACGTTGGTATTGACCCCATACTCCGGCAGTTCGTCAGTATTTGGCAATTTGCAGGCAGGTTCAA
CGCCACCGGCAATGGTGCTGTGGGTGTGTGCCGCCGCCGGCAAGTCGATGCCGGTCAATACCGTTACCCAGAGGACGACG
GCTACGTTGCCACCGAAATACGCGCCCTCGGAGTGCCGTTGA
ATGGCATCGAAGCACAGCAGGAACAGGCGGCGCGGCCAGCGCGGCTTTACATTGATCGAGTTGATGATCGTGGTGGCGAT
CATCGGGATTTTGGCGGCGCTGGCGATTCCGGCGTATCAGGACTACACGATCCGGTCGCGTGTGATCGAGGGGCTGGCAC
TGGCAGGGCAAGCCAAGGCGCTGGTGGTTGAAAATGCCGCCAACGCACAGAGTAGCCTGTCACTCGGTTCCGCATCGTTG
CCGGCCAGCAAGAACGTCAGTGCTCTGAATATTGATTCGTCCACCGGCGAAATCGCGGTGGTCTATGCATCCGCTGTTAC
GGGAGCGGGGGCGAATACGTTGGTATTGACCCCATACTCCGGCAGTTCGTCAGTATTTGGCAATTTGCAGGCAGGTTCAA
CGCCACCGGCAATGGTGCTGTGGGTGTGTGCCGCCGCCGGCAAGTCGATGCCGGTCAATACCGTTACCCAGAGGACGACG
GCTACGTTGCCACCGAAATACGCGCCCTCGGAGTGCCGTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
51.705 |
100 |
0.526 |
| pilA2 | Legionella pneumophila str. Paris |
44.848 |
95.376 |
0.428 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
44.242 |
95.376 |
0.422 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
35.263 |
100 |
0.387 |
| comP | Acinetobacter baylyi ADP1 |
40.741 |
93.642 |
0.382 |