Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABSH62_RS18945 Genome accession   NZ_CP158579
Coordinates   4015961..4017481 (+) Length   506 a.a.
NCBI ID   WP_032994449.1    Uniprot ID   -
Organism   Cronobacter malonaticus strain B20     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4010961..4022481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABSH62_RS18925 (ABSH62_18925) - 4012522..4013451 (-) 930 WP_004387276.1 branched-chain amino acid transaminase -
  ABSH62_RS18930 (ABSH62_18930) ilvM 4013472..4013729 (-) 258 WP_007766319.1 acetolactate synthase 2 small subunit -
  ABSH62_RS18935 (ABSH62_18935) ilvG 4013726..4015372 (-) 1647 WP_032994448.1 acetolactate synthase 2 catalytic subunit -
  ABSH62_RS18940 (ABSH62_18940) ilvL 4015511..4015609 (-) 99 WP_071601137.1 ilv operon leader peptide -
  ABSH62_RS18945 (ABSH62_18945) comM 4015961..4017481 (+) 1521 WP_032994449.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABSH62_RS18950 (ABSH62_18950) - 4017563..4017901 (-) 339 WP_004387280.1 DUF413 domain-containing protein -
  ABSH62_RS18955 (ABSH62_18955) hdfR 4018009..4018842 (+) 834 WP_105611999.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54909.22 Da        Isoelectric Point: 7.5411

>NTDB_id=1011833 ABSH62_RS18945 WP_032994449.1 4015961..4017481(+) (comM) [Cronobacter malonaticus strain B20]
MSLSVIHTRAALGVKAPLVTVEVHISTGLPGLTIVGLPETTVKEARDRVRSALINSGYEFPAKKVTINLAPADLPKEGGR
YDLPIAIALLAASEQLSATHLGEYEFVGELALTGALRGVPGAISAAIEALGCNRKIIVAYDNAPEVGLINKEGCLVAYHL
QEVCAFLEGKTQLECAGPSDFEFKEPAGDLSEVIGQPQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNHVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDISLEIPLPPPGMLSQVGQSG
ESSAQVRKRVMESRECQFARQGKLNAMLDNGEIRQFCVLSPEDAQWLEAALIKLGLSVRAWQRLLKVARTIADCEQSQRI
GRKHLQEALSYRAIDRMLAHLQNMMT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1011833 ABSH62_RS18945 WP_032994449.1 4015961..4017481(+) (comM) [Cronobacter malonaticus strain B20]
ATGTCGTTATCGGTTATCCATACTCGTGCTGCGCTTGGAGTAAAGGCGCCGCTCGTGACAGTTGAAGTACATATCAGCAC
CGGGCTGCCCGGCCTGACAATCGTCGGCCTGCCAGAAACTACCGTTAAAGAGGCAAGAGATCGTGTACGCAGCGCGCTCA
TTAATAGCGGTTATGAGTTCCCGGCTAAAAAGGTAACTATCAATCTGGCACCGGCGGATCTACCTAAAGAGGGTGGGAGA
TATGATTTGCCTATCGCCATCGCGCTTCTGGCAGCCTCTGAGCAACTAAGCGCAACACATCTTGGTGAATATGAATTTGT
AGGTGAGCTGGCGCTTACAGGGGCGTTGAGAGGTGTACCTGGGGCAATTTCAGCCGCTATAGAAGCGCTTGGGTGTAACA
GAAAAATTATCGTCGCATATGACAATGCTCCTGAAGTGGGACTCATCAACAAAGAGGGCTGCCTTGTGGCTTATCATCTG
CAGGAGGTCTGCGCTTTTCTGGAAGGGAAAACGCAGCTTGAATGCGCCGGACCATCTGACTTTGAATTCAAAGAGCCTGC
CGGAGACCTGAGTGAGGTCATCGGGCAACCTCAGGGAAAACGCGCACTGGAGTTAACCGCAGCGGGCGGGCATAACCTGC
TTTTTATTGGGCCTCCCGGTACAGGTAAAACGATGCTTGCCAGCAGACTCAATGGGTTACTACCCCCTCTGAGCGACCAG
GAAGCCCTTGAGAGCGCTGCGATACTAAGCCTGGTTAACCACGTCTCTTTGCACCATCAATGGCGTCAGCGTCCATTCAG
AGCCCCTCACCATAGCGCGTCGCTGAATGCCATGGTGGGTGGAGGAGCCATTCCAGCACCTGGAGAAATCTCACTTGCCC
ATAATGGCGTGCTTTTTCTGGATGAGTTACCTGAATTCGAGCGTCGCGTGTTGGATGCTTTACGCGAGCCGATTGAATCA
GGGCAGATTCATCTTTCACGCACCCGGGCAAAACTAACGTATCCGGCACGCTTTCAACTTATTGCTGCTATGAATCCCAG
CCCAACAGGACACTACAAAGGAAACCATAACCGCTGCTCGCCAGAGCAGACGCTGCGTTATCTCGGTCGGCTTTCCGGGC
CATTCCTTGACAGGTTTGATATCTCGCTTGAAATTCCGCTGCCTCCGCCGGGTATGCTTAGTCAGGTGGGACAGTCTGGC
GAAAGCAGCGCGCAAGTGAGGAAACGTGTAATGGAAAGCAGAGAATGTCAGTTTGCTCGGCAGGGCAAGCTTAACGCCAT
GCTGGACAATGGGGAGATACGTCAGTTTTGTGTGCTTAGCCCGGAGGACGCGCAGTGGCTGGAGGCAGCGCTAATCAAAT
TGGGACTGTCGGTTCGCGCATGGCAGCGCTTACTCAAAGTGGCGCGTACTATCGCTGATTGTGAACAGAGTCAAAGGATT
GGCCGTAAACATCTGCAGGAGGCACTGAGCTATCGTGCAATAGACAGGATGCTGGCGCATTTGCAAAACATGATGACATA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.707

100

0.611
  comM Glaesserella parasuis strain SC1401

59.961

100

0.601
  comM Vibrio campbellii strain DS40M4

59.761

99.209

0.593
  comM Vibrio cholerae strain A1552

59.443

99.407

0.591
  comM Legionella pneumophila str. Paris

48.387

98.024

0.474
  comM Legionella pneumophila strain ERS1305867

48.387

98.024

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.071

100

0.441

Multiple sequence alignment