Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LLUC023_RS09520 Genome accession   NZ_CP158368
Coordinates   1868685..1870058 (-) Length   457 a.a.
NCBI ID   WP_282667713.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC023     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1863685..1875058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC023_RS09485 (LLUC023_09495) atpF 1864104..1864610 (-) 507 WP_010906128.1 F0F1 ATP synthase subunit B -
  LLUC023_RS09490 (LLUC023_09500) atpB 1864625..1865338 (-) 714 WP_004255255.1 F0F1 ATP synthase subunit A -
  LLUC023_RS09495 (LLUC023_09505) - 1865385..1865600 (-) 216 WP_014572212.1 F0F1 ATP synthase subunit C -
  LLUC023_RS09500 (LLUC023_09510) - 1865783..1866559 (-) 777 WP_014572211.1 alpha/beta hydrolase family protein -
  LLUC023_RS09505 (LLUC023_09515) - 1866843..1867148 (-) 306 Protein_1853 ComEC/Rec2 family competence protein -
  LLUC023_RS09510 (LLUC023_09520) - 1867169..1868058 (-) 890 Protein_1854 IS982 family transposase -
  LLUC023_RS09515 (LLUC023_09525) comEC 1868135..1868644 (-) 510 WP_021165649.1 MBL fold metallo-hydrolase Machinery gene
  LLUC023_RS09520 (LLUC023_09530) comEC 1868685..1870058 (-) 1374 WP_282667713.1 ComEC/Rec2 family competence protein Machinery gene
  LLUC023_RS09525 (LLUC023_09535) comEA 1870039..1870485 (-) 447 WP_282675405.1 ComEA family DNA-binding protein Machinery gene
  LLUC023_RS09530 (LLUC023_09540) - 1870751..1872112 (-) 1362 WP_014572203.1 ABC transporter permease -
  LLUC023_RS09535 (LLUC023_09545) - 1872109..1873041 (-) 933 WP_014572202.1 ABC transporter ATP-binding protein -
  LLUC023_RS09540 (LLUC023_09550) - 1873147..1873545 (-) 399 WP_011676775.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 53292.60 Da        Isoelectric Point: 9.6844

>NTDB_id=1011018 LLUC023_RS09520 WP_282667713.1 1868685..1870058(-) (comEC) [Lactococcus cremoris strain UC023]
MRFLLIKFPLIFLTYLVVLLYFCIFTYNLPLLILFICSILLALFRKYYLMIPILIVFAVFFLLINSLSIRDNENQPKNLS
KIELIPDTIQVNGDLLSFQGRMNGQKYQVYDTLKSLKEKGFYQNLSQNCQLSFTGNLEIPETQRNFNGFDDQKYLTSQNI
YRQITIQQITNVEIKKNFDLHTLRRKAIVWTQNHFPKPMSDYMTGLLFGFLSKDFNQMSDIYSSLGIIHLFALSGMQVNF
FIDWFRKILLRMGLTRERVNLVQIPFSIFYAFMTGLSVSVLRALFQKNIRLTSLDNIAVTTLVLMLISPKFLLTTGGQLT
LFYAFVISMLNHPFSNLNGLKKVLTESSVLSLCVLPLLIFDFHIFQPLSILLTIIFGFFFDFMLLPLLLCCFLISFLGFS
LNLNYIFQILEWLVYKVDLPLHYPFVLGKPSSLELIILFVLIGLFVDSFSHKKRRFF

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1011018 LLUC023_RS09520 WP_282667713.1 1868685..1870058(-) (comEC) [Lactococcus cremoris strain UC023]
ATGAGATTTCTATTGATTAAATTTCCCCTGATTTTTCTAACTTATCTTGTTGTGCTACTTTATTTTTGTATCTTTACTTA
CAATTTACCCTTGCTTATTTTATTTATTTGCTCAATTTTACTAGCTTTATTCAGAAAATATTATCTAATGATTCCGATAT
TAATTGTTTTTGCTGTATTTTTTCTGTTAATCAATAGTCTTAGTATTAGGGATAATGAAAATCAACCAAAAAATCTCTCA
AAAATTGAATTAATTCCAGATACAATCCAAGTCAATGGTGATTTATTGAGTTTTCAGGGGAGAATGAATGGACAAAAATA
TCAAGTCTATGACACATTGAAAAGTCTAAAAGAGAAAGGGTTTTATCAGAACTTAAGTCAAAATTGTCAGTTAAGTTTCA
CAGGAAACCTTGAAATACCAGAAACTCAGCGAAATTTTAATGGTTTTGATGACCAAAAATATTTAACTAGTCAAAATATC
TATCGACAGATTACCATCCAACAAATTACAAATGTGGAAATAAAAAAGAATTTTGACCTTCATACTTTAAGGCGAAAGGC
AATTGTTTGGACACAAAATCATTTTCCAAAACCGATGAGTGACTATATGACAGGTTTGCTTTTTGGCTTTTTAAGTAAGG
ATTTTAATCAGATGAGCGATATTTACAGCTCTTTAGGAATTATTCATCTTTTTGCTCTATCAGGAATGCAAGTAAATTTT
TTTATTGATTGGTTTCGTAAAATACTTCTTCGCATGGGACTGACGAGAGAAAGAGTGAATCTTGTTCAAATTCCATTTTC
TATTTTTTATGCTTTTATGACGGGATTATCGGTTTCAGTTTTAAGAGCCCTTTTTCAAAAAAATATTCGTCTGACTTCTT
TGGATAATATCGCAGTTACGACATTAGTTTTGATGCTCATAAGTCCAAAATTTTTACTGACGACTGGTGGTCAGCTTACC
TTGTTTTATGCTTTTGTCATTTCGATGCTTAATCATCCTTTTTCTAATTTAAATGGATTGAAAAAAGTGCTGACAGAATC
ATCAGTCCTTTCACTTTGTGTTCTTCCGTTACTCATCTTTGATTTCCATATTTTTCAGCCTCTTTCAATATTATTAACAA
TTATATTTGGTTTTTTTTTTGATTTTATGTTGCTCCCGCTGCTTTTATGCTGTTTTCTTATATCATTTTTGGGATTTTCG
CTCAATTTAAATTATATTTTTCAAATTCTAGAATGGCTAGTTTATAAAGTTGATTTACCCTTACATTACCCCTTTGTTTT
GGGGAAACCTAGTTCACTCGAATTAATTATTCTATTTGTGTTAATTGGTTTATTCGTAGATTCATTTTCTCATAAAAAAA
GGAGATTTTTTTAA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(206-446)

Domain of unknown function (DUF4131) (DUF4131)

(27-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

97.374

100

0.974
  comEC/celB Streptococcus mitis SK321

44.138

95.186

0.42
  comEC/celB Streptococcus mitis NCTC 12261

43.448

95.186

0.414
  comEC/celB Streptococcus pneumoniae TIGR4

43.448

95.186

0.414
  comEC/celB Streptococcus pneumoniae Rx1

42.759

95.186

0.407
  comEC/celB Streptococcus pneumoniae D39

42.759

95.186

0.407
  comEC/celB Streptococcus pneumoniae R6

42.759

95.186

0.407

Multiple sequence alignment