Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   H1W90_RS02035 Genome accession   NZ_LR822033
Coordinates   376769..377026 (+) Length   85 a.a.
NCBI ID   WP_065973174.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1048     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 371769..382026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W90_RS10255 (STHERMO_0420) - 372854..373057 (-) 204 WP_180481200.1 protein rep -
  H1W90_RS10260 (STHERMO_0421) - 373065..373313 (-) 249 WP_158467679.1 protein rep -
  H1W90_RS02020 (STHERMO_0422) hdcB 373457..373891 (-) 435 WP_084829529.1 histidine decarboxylase maturation protein HdcB -
  H1W90_RS02025 (STHERMO_0423) - 373908..375371 (-) 1464 WP_224103628.1 amino acid permease -
  H1W90_RS02030 (STHERMO_0424) hdcA 375395..376330 (-) 936 WP_180478416.1 histidine decarboxylase, pyruvoyl type -
  H1W90_RS02035 (STHERMO_0425) prx 376769..377026 (+) 258 WP_065973174.1 hypothetical protein Regulator
  H1W90_RS02040 (STHERMO_0426) - 377146..380223 (+) 3078 WP_180481201.1 type I restriction endonuclease subunit R -
  H1W90_RS02045 (STHERMO_0427) - 380223..381818 (+) 1596 WP_180481202.1 type I restriction-modification system subunit M -

Sequence

Protein


Download         Length: 85 a.a.        Molecular weight: 9841.40 Da        Isoelectric Point: 5.6617

>NTDB_id=1010906 H1W90_RS02035 WP_065973174.1 376769..377026(+) (prx) [Streptococcus thermophilus isolate STH_CIRM_1048]
MLTYDEFKEAMDKGFIKGDTVQIVRKNGKIHDYVLDGERVEPHEILSLEKVSDIIKELADELGVSKTYIEKIIRVVNIHS
ELLKR

Nucleotide


Download         Length: 258 bp        

>NTDB_id=1010906 H1W90_RS02035 WP_065973174.1 376769..377026(+) (prx) [Streptococcus thermophilus isolate STH_CIRM_1048]
ATGCTAACCTATGATGAATTTAAAGAGGCTATGGACAAGGGTTTTATTAAAGGTGATACTGTCCAGATTGTCCGAAAGAA
TGGTAAGATCCATGACTACGTTTTAGACGGTGAACGAGTTGAGCCACACGAAATATTAAGCTTAGAAAAGGTATCGGATA
TAATAAAGGAGTTAGCGGACGAGTTAGGCGTTAGTAAGACATATATAGAAAAAATCATACGAGTAGTCAATATTCATTCA
GAACTACTTAAAAGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

58.621

68.235

0.4
  prx Streptococcus pyogenes MGAS315

57.627

69.412

0.4
  prx Streptococcus pyogenes MGAS8232

57.627

69.412

0.4
  prx Streptococcus pyogenes MGAS315

56.897

68.235

0.388
  prx Streptococcus pyogenes MGAS315

73.81

49.412

0.365