Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABRA92_RS16245 Genome accession   NZ_CP158305
Coordinates   3372747..3374270 (-) Length   507 a.a.
NCBI ID   WP_350225630.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP93     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3367747..3379270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRA92_RS16225 - 3369028..3370014 (+) 987 WP_020839880.1 serine/threonine protein kinase -
  ABRA92_RS16230 - 3370049..3370651 (+) 603 WP_025551223.1 thiol:disulfide interchange protein DsbA/DsbL -
  ABRA92_RS16235 - 3370693..3371571 (-) 879 WP_029787558.1 acyltransferase -
  ABRA92_RS16240 - 3371734..3372690 (+) 957 WP_025506753.1 DUF2860 domain-containing protein -
  ABRA92_RS16245 comM 3372747..3374270 (-) 1524 WP_350225630.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABRA92_RS16250 ilvG 3374735..3376381 (+) 1647 WP_005461385.1 acetolactate synthase 2 catalytic subunit -
  ABRA92_RS16255 ilvM 3376392..3376676 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  ABRA92_RS16260 ilvE 3376689..3377627 (+) 939 WP_015297538.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55017.17 Da        Isoelectric Point: 9.0357

>NTDB_id=1010557 ABRA92_RS16245 WP_350225630.1 3372747..3374270(-) (comM) [Vibrio parahaemolyticus strain VP93]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLALRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGDR
GEPTELVKERVSLARESMLNRNGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAEQ
IKRSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1010557 ABRA92_RS16245 WP_350225630.1 3372747..3374270(-) (comM) [Vibrio parahaemolyticus strain VP93]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCACCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAATTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCCCCGGCGGATTTACCTAAAGAAGGCGGACGT
TTTGATTTGCCTATCGCATTGGGTATTTTGGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTAGCCCTGTCTGGAGGATTAAGACCTGTTAAAGGTGTGCTTCCTGCCGCGTTGGCTGCAAGCAAAGTAGGAC
GTCATTTGGTGGTGCCTCATGTCAATGGCGATCAAGCGGCGTTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAACA
TGGTCGAGATCTACAAGACATCATTGGGCAGCAACAAGGAAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTCCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCGTTGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCGGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCGGGAGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAATGCCGGAGTTTGACCGTAAAGTGTTGGACTCGTTACGAGAACCACTGGAA
TCGGGTGAGATCATCATTTCGCGCGCACAAGGAAAAACGCGTTTTCCTGCTCGTTTTCAGCTGGTGGGCGCGTTGAATCC
AAGCCCAACTGGCTATTACGAAGGGAATCAAGCTCGCACTAACCCTCAAGCTATTTTGCGTTACTTAGGTCGTTTATCGG
GACCGCTTCTCGACCGTTTTGATATGTCGTTAGAAATTCCATCCTTACCGAAAGGCACGTTGGCGGAAGGTGGTGACCGA
GGTGAACCCACGGAACTCGTCAAAGAGCGCGTCAGTCTTGCTCGCGAGAGCATGCTCAATCGAAACGGCAAAGTAAACGC
ACTGCTTGGCAGCCGTGAGATTGAGGCATTTTGTCCGTTGCAAAAAAGCGATGCGGAATTTCTCGAAACTGCACTGCATC
GGCTGGGGTTATCGATTCGTGCCTATCATCGCATCATTAAAGTGGCCCGTACGATAGCGGATTTAGAAGGTGCTGAGCAG
ATTAAGCGTTCTCATTTGGCGGAAGCGCTCGGGTATCGCGCGATGGACCGATTGCTGAAACAACTCACGGCTCAAGCCGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

93.886

100

0.939
  comM Vibrio cholerae strain A1552

84.615

100

0.846
  comM Haemophilus influenzae Rd KW20

66.075

100

0.661
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.442

Multiple sequence alignment