Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   H1W89_RS08695 Genome accession   NZ_LR822029
Coordinates   1671563..1671880 (-) Length   105 a.a.
NCBI ID   WP_180474625.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1035     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1666563..1676880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W89_RS08665 (STHERMO_1930) - 1666922..1667584 (-) 663 WP_011681679.1 CPBP family intramembrane glutamic endopeptidase -
  H1W89_RS08670 (STHERMO_1931) - 1667681..1668124 (-) 444 WP_180474624.1 CAAX protease -
  H1W89_RS10050 (STHERMO_1932) - 1668198..1668536 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  H1W89_RS10055 (STHERMO_1933) - 1668580..1668855 (-) 276 WP_011681681.1 hypothetical protein -
  H1W89_RS08680 (STHERMO_1934) - 1668867..1669064 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  H1W89_RS08685 (STHERMO_1935) - 1669313..1670506 (-) 1194 WP_014608740.1 acetate kinase -
  H1W89_RS08690 (STHERMO_1936) comGH 1670562..1671518 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  H1W89_RS08695 (STHERMO_1937) comGG 1671563..1671880 (-) 318 WP_180474625.1 competence type IV pilus minor pilin ComGG Machinery gene
  H1W89_RS08700 (STHERMO_1938) comGF 1671858..1672295 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  H1W89_RS08705 (STHERMO_1939) comGE 1672279..1672572 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE Machinery gene
  H1W89_RS08710 (STHERMO_1940) comGD 1672544..1672972 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  H1W89_RS08715 (STHERMO_1941) comGC 1672932..1673258 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H1W89_RS08720 (STHERMO_1942) comGB 1673255..1674355 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  H1W89_RS08725 (STHERMO_1943) comGA/cglA/cilD 1674237..1675178 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  H1W89_RS08730 (STHERMO_1944) - 1675259..1675621 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11838.96 Da        Isoelectric Point: 10.6334

>NTDB_id=1010552 H1W89_RS08695 WP_180474625.1 1671563..1671880(-) (comGG) [Streptococcus thermophilus isolate STH_CIRM_1035]
MLLKKQVRGGVLLYALFMAGIFTLLLQVYLERVIASSRQNQAQIVASQSRLMAEMTMDLVDKEAGAFSFSQGTTTYEVKG
KQVIVRVASKGQIKTYRYVKKQDQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=1010552 H1W89_RS08695 WP_180474625.1 1671563..1671880(-) (comGG) [Streptococcus thermophilus isolate STH_CIRM_1035]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTTACACTCCTTCTTCA
GGTTTATCTGGAACGGGTGATAGCTAGCTCTAGACAAAACCAAGCGCAAATAGTGGCCAGTCAAAGCCGTCTCATGGCAG
AGATGACTATGGACTTGGTGGATAAGGAAGCAGGTGCTTTTAGTTTTTCTCAGGGGACTACGACTTACGAGGTTAAGGGT
AAGCAAGTGATTGTCAGAGTTGCCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAAGAAACAAGATCAGAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

44.444

94.286

0.419
  comGG Streptococcus mutans UA159

44.444

94.286

0.419