Detailed information NTG1010553

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ABRA92_RS14900
• Genome accession: NZ_CP158305
• Coordinates: 3087167..3088174 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain VP93
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3082167..3093174

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRA92_RS14880	rplC	3082701..3083330 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
ABRA92_RS14885	rpsJ	3083345..3083656 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
ABRA92_RS14890	rpmE	3084114..3084335 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
ABRA92_RS14895	priA	3084630..3086834 (+)	2205	WP_350225601.1	primosomal protein N'	-
ABRA92_RS14900	cytR	3087167..3088174 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
ABRA92_RS14905	ftsN	3088350..3088895 (+)	546	WP_005481405.1	cell division protein FtsN	-
ABRA92_RS14910	hslV	3089060..3089611 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
ABRA92_RS14915	hslU	3089635..3090966 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
ABRA92_RS14920	-	3091151..3092068 (+)	918	WP_017449001.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ABRA92_RS14925	rraA	3092145..3092657 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
ABRA92_RS14930	zapB	3092762..3093004 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=1010553 ABRA92_RS14900 WP_005481416.1 3087167..3088174(+) (cytR) [Vibrio parahaemolyticus strain VP93]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=1010553 ABRA92_RS14900 WP_005481416.1 3087167..3088174(+) (cytR) [Vibrio parahaemolyticus strain VP93]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAGCGACTCGGTCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTCCTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904