Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABRA92_RS15540 Genome accession   NZ_CP158305
Coordinates   3225795..3226520 (+) Length   241 a.a.
NCBI ID   WP_193262967.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP93     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3220795..3231520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRA92_RS15525 - 3221898..3224219 (+) 2322 WP_030000048.1 Tex family protein -
  ABRA92_RS15530 - 3224355..3224819 (-) 465 WP_193262966.1 ATP-dependent Lon protease -
  ABRA92_RS15535 bioH 3224943..3225710 (-) 768 WP_025535414.1 pimeloyl-ACP methyl ester esterase BioH -
  ABRA92_RS15540 comF 3225795..3226520 (+) 726 WP_193262967.1 phosphoribosyltransferase family protein Machinery gene
  ABRA92_RS15545 nfuA 3226618..3227202 (+) 585 WP_029825300.1 Fe-S biogenesis protein NfuA -
  ABRA92_RS15550 nudE 3227423..3227992 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  ABRA92_RS15555 cysQ 3228034..3228861 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ABRA92_RS15560 - 3229148..3229909 (-) 762 WP_029843270.1 type II secretion system protein N -
  ABRA92_RS15565 - 3229911..3230402 (-) 492 WP_350225910.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27731.87 Da        Isoelectric Point: 8.8474

>NTDB_id=1010555 ABRA92_RS15540 WP_193262967.1 3225795..3226520(+) (comF) [Vibrio parahaemolyticus strain VP93]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVHALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAAHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1010555 ABRA92_RS15540 WP_193262967.1 3225795..3226520(+) (comF) [Vibrio parahaemolyticus strain VP93]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCACGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGCTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment