Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABRA92_RS01800 Genome accession   NZ_CP158305
Coordinates   378958..379488 (+) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain VP93     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 373958..384488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRA92_RS01790 galU 376905..377777 (-) 873 WP_350225678.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ABRA92_RS01795 qstR 378035..378679 (-) 645 WP_140275403.1 LuxR C-terminal-related transcriptional regulator Regulator
  ABRA92_RS01800 ssb 378958..379488 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  ABRA92_RS01805 csrD 379729..381738 (+) 2010 WP_350225679.1 RNase E specificity factor CsrD -
  ABRA92_RS01810 - 381750..383195 (+) 1446 WP_021450081.1 MSHA biogenesis protein MshI -
  ABRA92_RS01815 gspM 383192..383842 (+) 651 WP_350225680.1 type II secretion system protein GspM -
  ABRA92_RS01820 - 383835..384164 (+) 330 WP_005481006.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=1010527 ABRA92_RS01800 WP_005466625.1 378958..379488(+) (ssb) [Vibrio parahaemolyticus strain VP93]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1010527 ABRA92_RS01800 WP_005466625.1 378958..379488(+) (ssb) [Vibrio parahaemolyticus strain VP93]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACCTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483

Multiple sequence alignment