Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ABRA92_RS01795 Genome accession   NZ_CP158305
Coordinates   378035..378679 (-) Length   214 a.a.
NCBI ID   WP_140275403.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP93     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 373035..383679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRA92_RS01785 uvrA 373945..376767 (-) 2823 WP_005490537.1 excinuclease ABC subunit UvrA -
  ABRA92_RS01790 galU 376905..377777 (-) 873 WP_350225678.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ABRA92_RS01795 qstR 378035..378679 (-) 645 WP_140275403.1 LuxR C-terminal-related transcriptional regulator Regulator
  ABRA92_RS01800 ssb 378958..379488 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  ABRA92_RS01805 csrD 379729..381738 (+) 2010 WP_350225679.1 RNase E specificity factor CsrD -
  ABRA92_RS01810 - 381750..383195 (+) 1446 WP_021450081.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24413.23 Da        Isoelectric Point: 8.7760

>NTDB_id=1010526 ABRA92_RS01795 WP_140275403.1 378035..378679(-) (qstR) [Vibrio parahaemolyticus strain VP93]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFNEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1010526 ABRA92_RS01795 WP_140275403.1 378035..378679(-) (qstR) [Vibrio parahaemolyticus strain VP93]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAATGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAGCGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

99.533

100

0.995
  qstR Vibrio campbellii strain DS40M4

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.093

100

0.523

Multiple sequence alignment