Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAF463_RS01695 Genome accession   NZ_CP158292
Coordinates   384486..385040 (+) Length   184 a.a.
NCBI ID   WP_192236001.1    Uniprot ID   -
Organism   Pantoea sp. BJ2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 379486..390040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAF463_RS01680 (AAF463_01680) - 379794..380144 (+) 351 WP_101763060.1 MmcQ/YjbR family DNA-binding protein -
  AAF463_RS01685 (AAF463_01685) - 380151..381215 (-) 1065 WP_350261421.1 NAD(P)-dependent alcohol dehydrogenase -
  AAF463_RS01690 (AAF463_01690) uvrA 381435..384263 (-) 2829 WP_101763058.1 excinuclease ABC subunit UvrA -
  AAF463_RS01695 (AAF463_01695) ssb 384486..385040 (+) 555 WP_192236001.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AAF463_RS01700 (AAF463_01700) - 385113..385574 (-) 462 WP_350261422.1 RES family NAD+ phosphorylase -
  AAF463_RS01705 (AAF463_01705) - 385571..386014 (-) 444 WP_101763056.1 antitoxin Xre-like helix-turn-helix domain-containing protein -
  AAF463_RS01710 (AAF463_01710) - 386087..386614 (-) 528 WP_210081825.1 isochorismatase family protein -
  AAF463_RS01715 (AAF463_01715) - 386736..387566 (+) 831 WP_101763054.1 AraC family transcriptional regulator -
  AAF463_RS01720 (AAF463_01720) - 387639..388592 (+) 954 WP_350261423.1 DMT family transporter -
  AAF463_RS01725 (AAF463_01725) - 389526..389921 (-) 396 WP_008109970.1 IS3 family transposase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19682.64 Da        Isoelectric Point: 5.2358

>NTDB_id=1010457 AAF463_RS01695 WP_192236001.1 384486..385040(+) (ssb) [Pantoea sp. BJ2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKTTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGQDKYTTEVVVNVGGTMQMLGGRQQGANAGGAPAGGQGGGNNNGWGQPQQPQQQPQGGGNQFSGGAQ
QRPQQQSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=1010457 AAF463_RS01695 WP_192236001.1 384486..385040(+) (ssb) [Pantoea sp. BJ2]
ATGGCCAGTCGTGGCGTAAACAAAGTGATTCTAGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGCTACATGCCAAATGG
TGGCGCGGTAGCCAACATTACGCTGGCCACGTCAGAAAGCTGGCGCGATAAGACAACCGGTGAAAACAAAGAGATCACGG
AATGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCGGAAGTGGCTGGCGAATACCTGCGTAAAGGTTCTCAGGTTTACATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGGCCGGCCAGGATAAATACACCACTGAAGTGGTGGTTAACGTTGG
CGGCACCATGCAGATGCTGGGCGGACGTCAGCAGGGCGCGAACGCAGGTGGCGCACCGGCGGGCGGCCAGGGCGGCGGCA
ATAACAATGGTTGGGGCCAGCCACAGCAGCCACAACAGCAGCCGCAGGGCGGTGGCAACCAGTTCAGCGGCGGTGCGCAG
CAGCGTCCACAGCAGCAGAGCGCGCCTGCTAACAACGAACCGCCAATGGATTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.429

100

0.734
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.571
  ssb Neisseria meningitidis MC58

45

97.826

0.44
  ssb Neisseria gonorrhoeae MS11

45

97.826

0.44
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.413

100

0.364

Multiple sequence alignment