Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ABN702_RS00225 Genome accession   NZ_CP158164
Coordinates   54422..55552 (+) Length   376 a.a.
NCBI ID   WP_417898892.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 49422..60552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS00205 (ABN702_00205) degS 49804..50946 (+) 1143 WP_417898888.1 sensor histidine kinase Regulator
  ABN702_RS00210 (ABN702_00210) degU 50974..51675 (+) 702 WP_417898889.1 response regulator Regulator
  ABN702_RS00215 (ABN702_00215) - 51996..52838 (+) 843 WP_417898890.1 DegV family protein -
  ABN702_RS00220 (ABN702_00220) - 53211..54182 (+) 972 WP_417898891.1 nuclease-related domain-containing protein -
  ABN702_RS00225 (ABN702_00225) comFA 54422..55552 (+) 1131 WP_417898892.1 DEAD/DEAH box helicase Machinery gene
  ABN702_RS00230 (ABN702_00230) - 55838..56224 (+) 387 WP_417898893.1 ComF family protein -
  ABN702_RS00235 (ABN702_00235) - 56285..56701 (+) 417 WP_417898894.1 TIGR03826 family flagellar region protein -
  ABN702_RS00240 (ABN702_00240) flgM 56765..57022 (+) 258 WP_417898895.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABN702_RS00245 (ABN702_00245) flgN 57032..57496 (+) 465 WP_417898896.1 flagellar export chaperone FlgN -
  ABN702_RS00250 (ABN702_00250) flgK 57509..58222 (+) 714 WP_417898897.1 flagellar hook-associated protein FlgK -
  ABN702_RS00255 (ABN702_00255) - 59029..59370 (+) 342 Protein_50 flagellar basal body rod C-terminal domain-containing protein -
  ABN702_RS00260 (ABN702_00260) flgL 59380..60258 (+) 879 WP_417898898.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 42437.99 Da        Isoelectric Point: 9.8319

>NTDB_id=1010009 ABN702_RS00225 WP_417898892.1 54422..55552(+) (comFA) [Bacillus sp. CSS-39]
MGRVSECTPLISWSGPKLESHTNHRLEWKGNLSKGQQLASKQVVQAVENRTSLLVWAVCGAGKTEVLFKGIEAALLKGQR
VCIATPRTDVVLELAPRLQHVFPETEIAVLYGGSEERTKNVPLTITTTHQLLRYYRGFDTIIIDEVDAFPYSMEPMLQYA
ANEARTEDGAIFYLSATPSKEMQRDVRMKKLDSVVIPARYHGKPLPVPGFEWCGKWRAKLGKGRIPINLKLWIQQHFKDG
KPIFLFVPDIELLEKVVRILQESYGDEVAGVHSKDNERKEKVARFREGKVKILVTTTILERGVTVPNVQVGVLGAEDDIF
TESALVQIAGRAGRNAKFSLGDVRFFHYGKTGEMNRARDHIRRMNYRAKQGGFLHE

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1010009 ABN702_RS00225 WP_417898892.1 54422..55552(+) (comFA) [Bacillus sp. CSS-39]
ATGGGACGTGTGAGTGAGTGTACGCCATTGATCAGTTGGAGTGGTCCTAAATTAGAAAGTCATACTAATCATCGTTTGGA
ATGGAAAGGTAACCTTTCAAAGGGGCAGCAGCTTGCCTCCAAACAGGTAGTGCAAGCCGTGGAAAACAGGACTTCTCTTC
TAGTATGGGCAGTTTGCGGAGCCGGAAAAACAGAAGTCCTTTTCAAAGGAATCGAAGCTGCACTCTTAAAAGGCCAAAGG
GTGTGCATAGCCACCCCACGAACCGACGTAGTGCTCGAACTTGCCCCTCGCCTTCAGCATGTTTTCCCAGAAACGGAAAT
CGCGGTGCTTTACGGCGGAAGCGAAGAACGCACGAAAAATGTACCGCTCACGATTACGACCACGCATCAGCTGCTCCGCT
ATTACCGAGGCTTCGACACAATCATCATTGATGAGGTGGATGCTTTTCCCTACTCGATGGAACCGATGCTGCAGTATGCT
GCAAATGAAGCAAGGACGGAGGATGGGGCAATTTTTTACCTTTCTGCCACTCCCTCCAAAGAGATGCAGCGTGACGTGAG
AATGAAAAAGCTGGATAGTGTGGTCATCCCGGCGAGGTATCATGGCAAGCCTCTTCCGGTTCCAGGATTTGAATGGTGCG
GTAAATGGCGTGCAAAGCTTGGAAAAGGAAGAATCCCGATCAATTTAAAGCTGTGGATACAACAACATTTTAAAGACGGA
AAACCAATCTTTCTTTTTGTACCGGATATTGAACTCCTGGAAAAGGTTGTGAGGATCTTGCAAGAGAGCTATGGCGACGA
GGTTGCGGGCGTTCATTCCAAGGACAATGAGCGAAAAGAGAAAGTGGCACGGTTTCGGGAGGGCAAAGTCAAAATTCTGG
TGACGACGACCATCCTTGAGAGAGGGGTGACCGTGCCGAATGTGCAGGTGGGGGTGCTTGGAGCGGAGGATGATATTTTT
ACGGAAAGTGCTTTGGTGCAGATTGCGGGAAGGGCTGGACGGAATGCCAAGTTCTCCTTAGGCGATGTACGTTTTTTCCA
TTATGGCAAAACGGGTGAAATGAATAGGGCGAGGGATCATATCAGAAGGATGAATTACCGGGCAAAACAGGGAGGGTTCT
TACATGAGTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(31-179)

Helicase conserved C-terminal domain (Helicase_C)

(236-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

55.616

97.074

0.54
  comFA Latilactobacillus sakei subsp. sakei 23K

42.486

92.021

0.391
  comFA/cflA Streptococcus mitis SK321

41.86

91.489

0.383
  comFA/cflA Streptococcus mitis NCTC 12261

41.86

91.489

0.383
  comFA/cflA Streptococcus pneumoniae D39

41.57

91.489

0.38
  comFA/cflA Streptococcus pneumoniae Rx1

41.57

91.489

0.38
  comFA/cflA Streptococcus pneumoniae R6

41.57

91.489

0.38
  comFA/cflA Streptococcus pneumoniae TIGR4

41.279

91.489

0.378
  comFA Lactococcus lactis subsp. cremoris KW2

39.886

93.351

0.372

Multiple sequence alignment