Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ABN702_RS00210 Genome accession   NZ_CP158164
Coordinates   50974..51675 (+) Length   233 a.a.
NCBI ID   WP_417898889.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 45974..56675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS00190 (ABN702_00190) - 46351..47697 (+) 1347 WP_417898885.1 sugar transferase -
  ABN702_RS00195 (ABN702_00195) - 47805..48788 (-) 984 WP_417898886.1 LCP family protein -
  ABN702_RS00200 (ABN702_00200) - 48808..49446 (-) 639 WP_417898887.1 YigZ family protein -
  ABN702_RS00205 (ABN702_00205) degS 49804..50946 (+) 1143 WP_417898888.1 sensor histidine kinase Regulator
  ABN702_RS00210 (ABN702_00210) degU 50974..51675 (+) 702 WP_417898889.1 response regulator Regulator
  ABN702_RS00215 (ABN702_00215) - 51996..52838 (+) 843 WP_417898890.1 DegV family protein -
  ABN702_RS00220 (ABN702_00220) - 53211..54182 (+) 972 WP_417898891.1 nuclease-related domain-containing protein -
  ABN702_RS00225 (ABN702_00225) comFA 54422..55552 (+) 1131 WP_417898892.1 DEAD/DEAH box helicase Machinery gene
  ABN702_RS00230 (ABN702_00230) - 55838..56224 (+) 387 WP_417898893.1 ComF family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 25883.60 Da        Isoelectric Point: 6.0339

>NTDB_id=1010008 ABN702_RS00210 WP_417898889.1 50974..51675(+) (degU) [Bacillus sp. CSS-39]
MDTTKIVIIDDHQLFREGVKRILDFEANFHVVAEGDDGIEALDLMEKHNPDVIIMDINMPKMNGVDATKQLVEANPEAKV
IVLSIHDDENYVTHALQTGARGYLLKEMDADALVDAVKVVADGGSYLHPKVTHNLVREYRRLSENGASNGGGAATLAYKQ
VEIRRPLHLLTRRECEVLQLLADGKSNKAIGEALFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEVR

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1010008 ABN702_RS00210 WP_417898889.1 50974..51675(+) (degU) [Bacillus sp. CSS-39]
ATGGATACAACAAAAATCGTAATTATTGATGATCATCAGCTTTTCCGTGAAGGAGTAAAACGCATTCTGGATTTTGAAGC
CAATTTTCATGTAGTGGCAGAAGGCGACGATGGAATTGAAGCATTGGATCTGATGGAAAAGCATAATCCGGATGTCATCA
TCATGGATATCAATATGCCGAAGATGAACGGTGTCGACGCGACCAAGCAATTGGTGGAGGCAAACCCGGAAGCAAAGGTC
ATCGTCCTTTCCATCCATGATGATGAAAACTATGTGACACACGCCCTGCAAACAGGAGCACGCGGCTATCTGTTGAAGGA
AATGGATGCAGATGCATTGGTTGATGCTGTGAAGGTTGTCGCTGATGGCGGGTCATACCTGCATCCGAAGGTGACGCATA
ATCTGGTAAGGGAATATCGACGCCTTTCCGAAAACGGCGCATCCAATGGCGGGGGTGCTGCGACGCTTGCGTATAAGCAA
GTCGAAATTCGTCGTCCATTACACCTGTTGACACGCCGCGAATGCGAAGTACTTCAACTATTGGCAGACGGAAAAAGCAA
CAAGGCAATCGGGGAAGCATTGTTCATCAGCGAAAAAACAGTGAAGAACCATGTCAGCAACATCCTTCAAAAAATGAATG
TAAATGACCGGACACAAGCCGTGGTAGTAGCAATTAAAAACGGCTGGGTAGAGGTCCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(169-224)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

76.793

100

0.781
  vraR Staphylococcus aureus N315

36.681

98.283

0.361

Multiple sequence alignment