Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   ABN702_RS00205 Genome accession   NZ_CP158164
Coordinates   49804..50946 (+) Length   380 a.a.
NCBI ID   WP_417898888.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 44804..55946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS00185 (ABN702_00185) - 45014..46075 (+) 1062 WP_417898884.1 glycosyltransferase family 4 protein -
  ABN702_RS00190 (ABN702_00190) - 46351..47697 (+) 1347 WP_417898885.1 sugar transferase -
  ABN702_RS00195 (ABN702_00195) - 47805..48788 (-) 984 WP_417898886.1 LCP family protein -
  ABN702_RS00200 (ABN702_00200) - 48808..49446 (-) 639 WP_417898887.1 YigZ family protein -
  ABN702_RS00205 (ABN702_00205) degS 49804..50946 (+) 1143 WP_417898888.1 sensor histidine kinase Regulator
  ABN702_RS00210 (ABN702_00210) degU 50974..51675 (+) 702 WP_417898889.1 response regulator Regulator
  ABN702_RS00215 (ABN702_00215) - 51996..52838 (+) 843 WP_417898890.1 DegV family protein -
  ABN702_RS00220 (ABN702_00220) - 53211..54182 (+) 972 WP_417898891.1 nuclease-related domain-containing protein -
  ABN702_RS00225 (ABN702_00225) comFA 54422..55552 (+) 1131 WP_417898892.1 DEAD/DEAH box helicase Machinery gene

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 43831.36 Da        Isoelectric Point: 7.1335

>NTDB_id=1010007 ABN702_RS00205 WP_417898888.1 49804..50946(+) (degS) [Bacillus sp. CSS-39]
MSRKVINSKQLDMIIEQMVKTVEVSKDEIFEIGENSRKEFETLAKELNSVKLEVAQLIHKQDKLEMQVRMARNRLSEVSR
QFKKFTEEQIRHAYDHAHELQLELHTTSQLEVQLRNRRNEIERRLVNLEETITKADRLVSQVSVVLNYVTSDLQQVGQMI
ADASEKREFGFKIMEAQEEERRRLSREIHDGPAQMLANVMMRSDLIDRTFRERGASEALSEIRSLKVMVRSALYEVRRII
YDLRPMALDDLGLIPTLKKYISTTEEYHNGQPSVEFVHMGSESRLSANLEVAVFRLVQESLQNAIKHAQANHIHVKLELK
PTLITVIVKDDGVGFDTTEKKEKSFGLLGMRERVELISGELKIQSKPGSGTTVFIHIPLS

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=1010007 ABN702_RS00205 WP_417898888.1 49804..50946(+) (degS) [Bacillus sp. CSS-39]
ATGTCTCGGAAAGTTATAAACTCTAAACAATTAGACATGATAATTGAACAAATGGTGAAAACGGTTGAAGTGAGTAAAGA
TGAAATCTTCGAAATCGGGGAAAATTCCAGAAAAGAATTCGAGACACTGGCCAAGGAATTAAATTCGGTAAAGCTTGAAG
TTGCACAGCTGATCCACAAGCAGGATAAACTGGAAATGCAGGTTCGAATGGCAAGAAACCGACTATCAGAAGTGAGCAGG
CAATTTAAAAAATTTACTGAAGAGCAAATCAGGCATGCCTATGACCATGCGCATGAGTTGCAGCTAGAGCTTCATACTAC
TTCACAATTGGAAGTGCAGCTGCGTAATCGCCGCAATGAGATTGAACGCAGGTTGGTCAACCTCGAAGAGACGATTACAA
AAGCGGATCGTCTTGTCAGTCAGGTGTCCGTTGTATTGAATTATGTGACAAGTGATCTGCAGCAGGTAGGTCAGATGATA
GCAGATGCATCTGAAAAGCGTGAGTTCGGGTTTAAAATTATGGAAGCGCAAGAGGAAGAACGCAGAAGGCTGTCACGTGA
AATCCATGATGGACCTGCGCAAATGCTCGCAAACGTAATGATGCGTTCGGATCTGATTGACCGGACCTTCCGCGAGCGGG
GAGCATCAGAAGCGCTAAGTGAGATCCGCTCCTTGAAGGTGATGGTCCGTTCCGCCCTTTACGAGGTGAGACGAATCATT
TACGATCTTCGCCCGATGGCACTGGATGATCTTGGGTTGATACCAACCCTAAAGAAATACATTTCGACAACAGAAGAATA
TCATAATGGACAGCCAAGCGTGGAATTCGTACACATGGGTTCCGAATCAAGATTGTCGGCAAATCTAGAGGTGGCAGTAT
TCCGTTTAGTCCAGGAATCGCTGCAAAATGCAATCAAGCATGCGCAAGCAAACCATATCCATGTAAAACTCGAATTAAAA
CCCACTCTTATAACAGTTATCGTCAAGGATGACGGAGTAGGGTTCGATACGACAGAAAAAAAAGAAAAGTCGTTTGGCTT
ACTCGGAATGAGGGAACGGGTAGAACTGATCAGTGGCGAACTAAAGATACAATCCAAGCCAGGGTCGGGAACCACGGTAT
TTATCCATATTCCACTAAGCTAA

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(290-379)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

56.623

100

0.574

Multiple sequence alignment