Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BIKONL_RS06550 Genome accession   NZ_CP158159
Coordinates   1443226..1444716 (-) Length   496 a.a.
NCBI ID   WP_029615421.1    Uniprot ID   -
Organism   Pseudomonas putida strain CRA-04     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1438226..1449716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIKONL_RS06540 (BIKONL_001319) - 1441800..1442792 (+) 993 WP_049588349.1 response regulator -
  BIKONL_RS06545 (BIKONL_001320) - 1442789..1443157 (+) 369 WP_010955756.1 response regulator -
  BIKONL_RS06550 (BIKONL_001321) comM 1443226..1444716 (-) 1491 WP_029615421.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BIKONL_RS06555 - 1445860..1446135 (-) 276 WP_161775482.1 bacteriocin -
  BIKONL_RS06560 (BIKONL_001325) - 1447228..1448205 (-) 978 WP_350298435.1 hypothetical protein -
  BIKONL_RS06565 (BIKONL_001326) - 1448215..1448703 (-) 489 WP_010955754.1 type VI secretion system tube protein Hcp -
  BIKONL_RS06570 (BIKONL_001327) - 1449275..1449415 (-) 141 WP_010955753.1 hypothetical protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53019.94 Da        Isoelectric Point: 7.7100

>NTDB_id=1009990 BIKONL_RS06550 WP_029615421.1 1443226..1444716(-) (comM) [Pseudomonas putida strain CRA-04]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLKYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPIATLTDMECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGKAPLNSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAVRVAEARELQHRRQGCANAFLDLEGLRHHCGLVAADQVWLEGACERLTLSLRAAHRLLKVARTLADLEGCETI
GRAHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1009990 BIKONL_RS06550 WP_029615421.1 1443226..1444716(-) (comM) [Pseudomonas putida strain CRA-04]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCTCATCTCACCCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGAAGTACCCACAGCGGCGCATTACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGCCGA
TATGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCGACGGCCAGGTGCCGATTGCCACCCTGACCGATATGGAATGCCT
GGGCGAACTGGCGCTGTCGGGGAAATTGCGCCCGGTGCAGGGCGTGCTACCTGCGGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTACCACGGGAAAATGCCGAGGAAGCCAGCCTGGCCGGCGGGTTGGTGGTGTATGCGGTGGGCCACCTG
CTGGAGTTGGTCGCCCACCTGAACGGCCAGGTGCCGCTACCGCCCTACGCCGCCAACGGTTTGATCCTGCAGCAACGGCC
CTACCCGGACCTGAGCGAAGTGCAGGGGCAACTGGCAGCCAAGCGTGCCTTGCTGCTGGCTGCGGCCGGGGCGCACAACC
TGCTGTTCACCGGGCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTTCCCGGGCTGCTGCCACCGCTGGACGAG
CACGAAGCGCTGGAAGTGGCGGCAATCCAGTCGGTCAGCGGGAAAGCGCCGCTGAACAGCTGGCCACAGCGACCCTTTCG
CCACCCCCATCACTCTGCGTCCGGCCCGGCGCTGGTCGGTGGCAGTAGCCGACCGCAACCAGGTGAAATCACGCTCGCCC
ATCACGGCGTGTTGTTTCTCGACGAACTTCCGGAGTTTGAGCGGCGCGTACTGGAAGTGCTTCGCGAGCCACTGGAGTCA
GGTGAAATCGTGATTGCCCGTGCCCGCGACAAAGTGCGTTTCCCCGCGCGTTTCCAGCTGGTGGCAGCGATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGTTGCAGCACCGAGCAGATCGCGCGCTATCGCAACAAGCTGT
CCGGGCCACTGCTGGACCGCATCGACCTGCACCTGACCGTGGCTCGCGAGAGCACTACATTGAACAACCAGCCTTGCGGT
GAAACCAGTGCCGATGTCGCCGTCAGGGTGGCTGAAGCGCGGGAGCTGCAGCACAGGCGACAAGGGTGTGCGAATGCATT
TCTCGACCTTGAAGGTTTAAGGCATCACTGTGGGTTGGTAGCGGCGGACCAAGTCTGGCTGGAAGGGGCCTGCGAGCGGC
TGACCTTGTCGCTACGGGCGGCGCACCGGTTGTTGAAGGTGGCGCGGACACTGGCGGACCTGGAGGGATGCGAGACGATT
GGCCGGGCGCACCTGGCCGAGGCCCTGCAGTACCGACCGGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.2

100

0.556
  comM Vibrio campbellii strain DS40M4

55.645

100

0.556
  comM Vibrio cholerae strain A1552

55.354

99.798

0.552
  comM Glaesserella parasuis strain SC1401

54.092

100

0.546
  comM Legionella pneumophila str. Paris

48.992

100

0.49
  comM Legionella pneumophila strain ERS1305867

48.992

100

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.41

100

0.48

Multiple sequence alignment