Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFV67_RS13650 Genome accession   NZ_CP158116
Coordinates   2977454..2978977 (+) Length   507 a.a.
NCBI ID   WP_332396983.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain IS021     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2972454..2983977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV67_RS13635 (ABFV67_13630) ilvE 2974066..2975007 (-) 942 WP_004397593.1 branched-chain-amino-acid transaminase -
  ABFV67_RS13640 (ABFV67_13635) ilvM 2975020..2975304 (-) 285 WP_004397591.1 acetolactate synthase 2 small subunit -
  ABFV67_RS13645 (ABFV67_13640) ilvG 2975304..2976950 (-) 1647 WP_170905015.1 acetolactate synthase 2 catalytic subunit -
  ABFV67_RS13650 (ABFV67_13645) comM 2977454..2978977 (+) 1524 WP_332396983.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFV67_RS13655 (ABFV67_13650) - 2979120..2979719 (-) 600 WP_154169665.1 thiol:disulfide interchange protein DsbA/DsbL -
  ABFV67_RS13660 (ABFV67_13655) - 2979753..2980739 (-) 987 WP_158144993.1 serine/threonine protein kinase -
  ABFV67_RS13665 (ABFV67_13660) - 2980839..2981108 (-) 270 WP_004397581.1 YihD family protein -
  ABFV67_RS13670 (ABFV67_13665) - 2981331..2981498 (-) 168 WP_110168332.1 hypothetical protein -
  ABFV67_RS13675 (ABFV67_13670) - 2981781..2982425 (+) 645 WP_154169667.1 hemolysin III family protein -
  ABFV67_RS13680 (ABFV67_13675) - 2982454..2983899 (-) 1446 WP_332396982.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55347.38 Da        Isoelectric Point: 7.1698

>NTDB_id=1009839 ABFV67_RS13650 WP_332396983.1 2977454..2978977(+) (comM) [Vibrio metschnikovii strain IS021]
MGLAIIHSRASIGVQAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIPHTHLAAYEFIGELALSGEIRRVKGVLPAALAANHAQRSLVVPQDNGDQAALVGESNHKSAQNL
LEVCADLCGQKNLTLFQSEPIVQPPDHSRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSE
EEAMETASVASLTQQEINQYNWKRRPFRSPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQVILRYLSRLSGPLLDRFDMSIEIPALPKGTLSQGGDR
GETTEVVRQRVQIARERMLARSGKVNGLLQSREIDIFCPLARSDAEFLEAALHRLGLSVRAYHRIIKVARTIADLEGVDD
IQRSHLAEALGYRAMDRLLKQLVAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1009839 ABFV67_RS13650 WP_332396983.1 2977454..2978977(+) (comM) [Vibrio metschnikovii strain IS021]
ATGGGCCTTGCGATTATTCATAGCCGAGCCAGTATTGGCGTCCAAGCACCAGAAGTCACTGTCGAAGTACACATCAGTAA
CGGCATGCCCGGCTTCACCTTAGTCGGCCTCCCCGAAACCACGGTGAAAGAATCCAAAGACCGAGTGCGCAGTGCGATCA
TTAACTCACGCTTCGAGTTTCCCGCTAAACGAATTACCGTTAACTTAGCACCTGCCGATCTCCCCAAGGAGGGAGGCCGG
TTTGATTTACCCATCGCTCTGGGGATTTTAGCTGCGTCTGAACAAATACCTCACACTCATTTAGCCGCTTATGAGTTTAT
TGGTGAGCTGGCATTGTCGGGAGAAATCAGGCGCGTTAAGGGGGTTTTGCCCGCGGCATTGGCAGCGAATCATGCTCAAC
GCAGTTTGGTCGTACCGCAAGATAACGGCGATCAAGCGGCGTTAGTCGGTGAAAGCAACCATAAATCCGCACAAAACCTG
TTAGAAGTTTGCGCGGATTTATGTGGTCAAAAAAACTTAACGCTCTTTCAAAGCGAACCGATTGTACAACCACCCGATCA
CTCTCGAGATCTACAAGATATTATTGGTCAACAACAAGGAAAACGAGCACTGGAAATTGCCGCAGCAGGGAATCATAACT
TGCTATTTCTTGGCCCTCCGGGGACCGGGAAAACCATGCTCGCATCACGGCTGTGTGATTTACTACCAGAAATGAGCGAA
GAGGAAGCGATGGAAACCGCCTCTGTCGCCTCGCTGACCCAGCAGGAGATCAATCAATACAACTGGAAACGTCGTCCTTT
TCGGTCACCACACCACTCAAGCTCGATGGCAGCCTTAGTTGGCGGCGGTACGATTCCACGGCCAGGAGAAATCTCATTAG
CCCATAACGGCCTATTGTTTCTCGACGAAATGCCTGAATTTGAACGAAAAGTGCTTGATTCACTCCGCGAGCCTCTTGAA
TCAGGAGAGATTATTATTTCACGCGCCCAAGGTAAAACTCGCTTTCCGGCACGCTTTCAACTGGTGGGTGCACTCAATCC
TAGCCCTACTGGCTATTATGAGGGCAACCAAGCAAGGGTTAACCCGCAAGTGATCCTGCGCTATTTAAGTCGACTTTCTG
GCCCTTTGCTAGACCGATTTGATATGTCGATTGAAATTCCTGCGCTACCAAAAGGGACGTTATCTCAAGGCGGTGATCGA
GGAGAAACAACGGAGGTGGTACGGCAACGAGTACAGATCGCGCGCGAACGAATGCTGGCGCGCAGTGGTAAGGTTAACGG
GCTGCTGCAAAGTCGTGAGATTGATATTTTTTGCCCATTAGCTCGTTCGGATGCAGAGTTCTTAGAAGCGGCATTGCATC
GCTTAGGCTTATCCGTCCGCGCTTATCACCGGATCATTAAAGTGGCACGGACTATCGCAGATTTAGAGGGCGTAGACGAT
ATTCAGCGGTCACATCTGGCGGAAGCGCTCGGTTATCGTGCAATGGATAGGCTACTCAAACAATTAGTCGCGCAAGCCGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

87.574

100

0.876
  comM Vibrio campbellii strain DS40M4

84.615

100

0.846
  comM Haemophilus influenzae Rd KW20

65.415

99.803

0.653
  comM Glaesserella parasuis strain SC1401

65.02

99.803

0.649
  comM Legionella pneumophila str. Paris

50.403

97.83

0.493
  comM Legionella pneumophila strain ERS1305867

50.403

97.83

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.504

100

0.436

Multiple sequence alignment