Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABFV67_RS12085 Genome accession   NZ_CP158116
Coordinates   2623603..2624121 (-) Length   172 a.a.
NCBI ID   WP_004396114.1    Uniprot ID   A0AAW8GVB6
Organism   Vibrio metschnikovii strain IS021     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2618603..2629121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV67_RS12075 (ABFV67_12075) - 2620506..2622113 (-) 1608 WP_276423828.1 site-specific integrase -
  ABFV67_RS12080 (ABFV67_12080) - 2622103..2623452 (-) 1350 WP_136981036.1 site-specific integrase -
  ABFV67_RS12085 (ABFV67_12085) ssb 2623603..2624121 (-) 519 WP_004396114.1 single-stranded DNA-binding protein Machinery gene
  ABFV67_RS12090 (ABFV67_12090) qstR 2624404..2625054 (+) 651 WP_158137756.1 LuxR C-terminal-related transcriptional regulator Regulator
  ABFV67_RS12095 (ABFV67_12095) galU 2625252..2626121 (+) 870 WP_154169290.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ABFV67_RS12100 (ABFV67_12100) uvrA 2626266..2629091 (+) 2826 WP_332398097.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18967.94 Da        Isoelectric Point: 5.2358

>NTDB_id=1009836 ABFV67_RS12085 WP_004396114.1 2623603..2624121(-) (ssb) [Vibrio metschnikovii strain IS021]
MATRGVNKVILVGNLGADPEVRYMASGAAVANITLATSESWRDKTTGEQRERTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGYNGIMQMLGGRQQGAAPGQGAPQGQQSNWGQPQQPSAQQSPKQSAPQQAQPQYN
EPPMDFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1009836 ABFV67_RS12085 WP_004396114.1 2623603..2624121(-) (ssb) [Vibrio metschnikovii strain IS021]
ATGGCAACCCGTGGCGTAAATAAAGTAATTTTGGTCGGTAACTTAGGGGCTGACCCTGAAGTTCGCTATATGGCAAGTGG
TGCTGCGGTAGCAAATATCACTCTGGCAACCTCAGAAAGCTGGCGTGATAAAACCACCGGCGAGCAACGTGAAAGAACGG
AATGGCACCGCGTAGCCTTATATGGCAAACTCGCTGAAGTTGCGGGCGAATATTTACGTAAGGGATCGCAGGTTTATATC
GAAGGTCAATTACAAACGCGTAAATGGCAAGATCAGAGCGGCCAAGATCGTTATACCACGGAAGTTGTGGTGCAAGGTTA
TAATGGCATTATGCAAATGTTGGGTGGTCGTCAGCAAGGTGCAGCGCCTGGACAGGGGGCTCCTCAAGGTCAACAAAGTA
ACTGGGGACAGCCACAACAACCTTCAGCGCAGCAATCACCGAAGCAGTCAGCACCTCAGCAAGCTCAGCCACAATATAAT
GAGCCGCCGATGGATTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.921

100

0.843
  ssb Glaesserella parasuis strain SC1401

50.785

100

0.564
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.494
  ssb Neisseria meningitidis MC58

46.893

100

0.483

Multiple sequence alignment