Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ABFV67_RS12090 Genome accession   NZ_CP158116
Coordinates   2624404..2625054 (+) Length   216 a.a.
NCBI ID   WP_158137756.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain IS021     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2619404..2630054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV67_RS12075 (ABFV67_12075) - 2620506..2622113 (-) 1608 WP_276423828.1 site-specific integrase -
  ABFV67_RS12080 (ABFV67_12080) - 2622103..2623452 (-) 1350 WP_136981036.1 site-specific integrase -
  ABFV67_RS12085 (ABFV67_12085) ssb 2623603..2624121 (-) 519 WP_004396114.1 single-stranded DNA-binding protein Machinery gene
  ABFV67_RS12090 (ABFV67_12090) qstR 2624404..2625054 (+) 651 WP_158137756.1 LuxR C-terminal-related transcriptional regulator Regulator
  ABFV67_RS12095 (ABFV67_12095) galU 2625252..2626121 (+) 870 WP_154169290.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ABFV67_RS12100 (ABFV67_12100) uvrA 2626266..2629091 (+) 2826 WP_332398097.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25234.04 Da        Isoelectric Point: 10.0663

>NTDB_id=1009837 ABFV67_RS12090 WP_158137756.1 2624404..2625054(+) (qstR) [Vibrio metschnikovii strain IS021]
MPKSSYARTIYYLTTDVNQSTPSRLQKAFHLLAIPIEKVEPEPLVQQYRHSKHKILLLDYQDHRAIRHRLGPLKLTTHYL
ETILFNVDKRLPTDLLISFGNLKGLFYQTDSAEQLSHGLAQIINGQNWLPRHVSNQLLHHFRYAFHEQHTKATLDLTVRE
IQILRCLQAQASNDDIAKNLFISELTVKSHLYQIYKKLAVKNRAQAISWANHHLFQ

Nucleotide


Download         Length: 651 bp        

>NTDB_id=1009837 ABFV67_RS12090 WP_158137756.1 2624404..2625054(+) (qstR) [Vibrio metschnikovii strain IS021]
ATGCCCAAATCGAGTTACGCGCGTACCATCTACTATCTGACCACAGACGTAAATCAATCGACTCCGAGTCGGTTACAAAA
AGCATTTCATCTACTCGCGATCCCTATCGAAAAAGTGGAGCCTGAACCGTTAGTACAACAATACCGACACAGTAAACACA
AGATACTGCTGCTCGATTATCAAGATCATCGCGCGATTCGTCATCGACTTGGTCCTTTAAAACTGACCACTCATTATCTT
GAGACGATTCTTTTTAATGTCGATAAACGACTACCGACCGATCTATTAATCAGCTTTGGGAATTTAAAGGGACTCTTTTA
TCAAACCGATAGTGCGGAGCAACTTTCCCATGGCTTGGCGCAGATCATTAATGGCCAAAATTGGTTGCCTCGTCATGTTT
CGAACCAATTATTACATCATTTTCGTTACGCCTTTCATGAGCAACATACCAAAGCCACTCTCGATCTTACGGTTCGAGAA
ATACAGATTTTACGCTGTTTGCAAGCGCAAGCTTCCAACGATGATATTGCGAAGAACTTATTTATCAGCGAACTAACCGT
AAAATCTCATTTGTACCAAATTTATAAAAAGCTCGCGGTAAAAAACCGAGCTCAAGCGATATCTTGGGCCAATCACCATC
TTTTTCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

60.93

99.537

0.606
  qstR Vibrio parahaemolyticus RIMD 2210633

46.512

99.537

0.463
  qstR Vibrio campbellii strain DS40M4

46.047

99.537

0.458

Multiple sequence alignment