Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABHF91_RS14720 Genome accession   NZ_CP158016
Coordinates   3124359..3124940 (-) Length   193 a.a.
NCBI ID   WP_409421009.1    Uniprot ID   -
Organism   Pseudaeromonas sp. ZJS20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3119359..3129940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHF91_RS14710 (ABHF91_14695) - 3119637..3121295 (+) 1659 WP_409421007.1 alpha/beta hydrolase-fold protein -
  ABHF91_RS14715 (ABHF91_14700) - 3122157..3123725 (+) 1569 WP_409421008.1 DUF262 domain-containing protein -
  ABHF91_RS14720 (ABHF91_14705) ssb 3124359..3124940 (-) 582 WP_409421009.1 single-stranded DNA-binding protein Machinery gene
  ABHF91_RS14725 (ABHF91_14710) uvrA 3125191..3128022 (+) 2832 WP_409421010.1 excinuclease ABC subunit UvrA -
  ABHF91_RS14730 (ABHF91_14715) - 3128077..3128286 (-) 210 WP_409421011.1 hypothetical protein -
  ABHF91_RS14735 (ABHF91_14720) - 3128457..3129305 (+) 849 WP_409421012.1 sulfurtransferase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21172.31 Da        Isoelectric Point: 5.9273

>NTDB_id=1009525 ABHF91_RS14720 WP_409421009.1 3124359..3124940(-) (ssb) [Pseudaeromonas sp. ZJS20]
MASRGVNKVILIGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRCVLYRRLAEIAGEYLKKGAKVYLE
GRLQTREWQDQQGQKRYTTEIVVNEMQMLDSRPGAGGGQAQQGGQGNWGRPQQAPAAQGQGGYGQQPQQPAAQGGYGQQG
GYGAPAAPKPQGQQPQQPSYNEPPMDFDDDIPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=1009525 ABHF91_RS14720 WP_409421009.1 3124359..3124940(-) (ssb) [Pseudaeromonas sp. ZJS20]
ATGGCCAGTCGTGGCGTGAACAAAGTCATTCTGATCGGTAACCTGGGGCAGGATCCGGAAGTCCGTTACATGCCCAACGG
CAACGCGGTGGCCAATATCACGGTCGCCACCTCCGAAAGCTGGAAGGACCAGCAGGGTCAACAGCAGGAGCGCACCGAGT
GGCACCGCTGCGTCCTCTACCGCCGTCTGGCGGAGATCGCCGGTGAATACCTGAAGAAGGGGGCCAAGGTCTACCTGGAA
GGCCGCCTGCAGACCCGCGAATGGCAGGATCAACAGGGCCAGAAGCGCTACACCACAGAAATCGTGGTGAACGAGATGCA
GATGCTGGACAGCCGTCCCGGCGCCGGTGGCGGTCAGGCCCAGCAGGGCGGTCAGGGCAACTGGGGCCGTCCGCAACAGG
CCCCGGCGGCACAGGGTCAGGGCGGCTACGGCCAGCAGCCCCAGCAACCGGCTGCTCAGGGTGGCTACGGTCAGCAGGGC
GGCTACGGCGCCCCCGCCGCCCCCAAGCCCCAGGGTCAGCAACCCCAGCAGCCCAGCTACAACGAACCGCCGATGGATTT
CGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

62.626

100

0.642
  ssb Glaesserella parasuis strain SC1401

53.093

100

0.534
  ssb Neisseria meningitidis MC58

51.053

98.446

0.503
  ssb Neisseria gonorrhoeae MS11

51.053

98.446

0.503

Multiple sequence alignment