Detailed information NTG1009523

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ABHF91_RS14230
• Genome accession: NZ_CP158016
• Coordinates: 3029515..3030621 (-)
• Length: 368 a.a.
• NCBI ID: WP_409420917.1
• Uniprot ID: -
• Organism: Pseudaeromonas sp. ZJS20
• Function: type IV pilus retraction (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3024515..3035621

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABHF91_RS14210 (ABHF91_14195)	brnQ	3025033..3026343 (-)	1311	WP_409420913.1	branched-chain amino acid transport system II carrier protein	-
ABHF91_RS14215 (ABHF91_14200)	-	3026518..3027225 (-)	708	WP_409420914.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
ABHF91_RS14220 (ABHF91_14205)	srmB	3027310..3028614 (+)	1305	WP_409420915.1	ATP-dependent RNA helicase SrmB	-
ABHF91_RS14225 (ABHF91_14210)	yaaA	3028696..3029469 (-)	774	WP_409420916.1	peroxide stress protein YaaA	-
ABHF91_RS14230 (ABHF91_14215)	pilU	3029515..3030621 (-)	1107	WP_409420917.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ABHF91_RS14235 (ABHF91_14220)	pilT	3030632..3031666 (-)	1035	WP_409420918.1	type IVa pilus ATPase TapT	Machinery gene
ABHF91_RS14240 (ABHF91_14225)	-	3031704..3032411 (+)	708	WP_409420919.1	YggS family pyridoxal phosphate-dependent enzyme	-
ABHF91_RS14245 (ABHF91_14230)	proC	3032412..3033236 (+)	825	WP_409420920.1	pyrroline-5-carboxylate reductase	-
ABHF91_RS14250 (ABHF91_14235)	-	3033245..3033796 (+)	552	WP_409420921.1	YggT family protein	-
ABHF91_RS14255 (ABHF91_14240)	yggU	3033796..3034089 (+)	294	WP_409420922.1	DUF167 family protein YggU	-

Sequence

Protein

• Length: 368 a.a.
• Molecular weight: 41137.35 Da
• Isoelectric Point: 5.6501

>NTDB_id=1009523 ABHF91_RS14230 WP_409420917.1 3029515..3030621(-) (pilU) [Pseudaeromonas sp. ZJS20]
MTLDSLLGQLVDRQGSDLFVTVGKPPCLKINGVLTPIDKTNLEADDIVTLLKEAMSQEQLERFCQTKEANYALQRPELGR
FRVSCFWQQEMPGMVFRRIETRIPTMEELYLPAVLKELVMAKRGLLLFVGATGAGKSTTQAAMIGYRNHNSDGHILTVED
PVEFVHQHERCLITQREVGADTESFDVALKSSLRQAPDVILIGEIRSKETMEFAISFAETGHLCMATLHANNANQALERI
LHLIPEDKHRQLLFDLSLNLKGIIAQQLIPTRDGQGRRAVFEILANTPLVSDIVRKGELHRLKEVMARSNEQGMMTFDQS
LFELYRQGLIGYNEALAFADSANEVRLMIKLAGGNNMSAGTLDNVTVD

Nucleotide

• Length: 1107 bp

>NTDB_id=1009523 ABHF91_RS14230 WP_409420917.1 3029515..3030621(-) (pilU) [Pseudaeromonas sp. ZJS20]
ATGACACTGGATAGTCTGCTGGGCCAATTGGTGGATCGTCAGGGCTCTGACCTGTTTGTCACCGTGGGCAAGCCCCCCTG
CCTCAAGATCAACGGGGTGCTGACCCCCATCGACAAGACCAACCTGGAGGCGGATGACATTGTCACCCTGCTCAAGGAGG
CCATGAGCCAGGAGCAGCTGGAGCGCTTCTGCCAGACCAAGGAGGCCAACTATGCCCTGCAGCGGCCCGAGCTGGGGCGC
TTCCGGGTAAGCTGCTTCTGGCAGCAGGAGATGCCGGGTATGGTGTTCCGCCGCATCGAGACCCGCATCCCCACCATGGA
GGAGCTCTATCTGCCGGCGGTGCTCAAGGAGCTGGTGATGGCCAAGCGGGGTCTGCTGCTGTTTGTCGGCGCCACCGGCG
CCGGTAAGTCCACCACCCAGGCCGCCATGATCGGCTACCGCAACCACAACAGCGATGGCCATATCCTGACGGTGGAGGAT
CCGGTGGAGTTCGTCCATCAGCACGAGCGCTGTCTCATCACCCAGCGGGAGGTGGGCGCGGATACCGAGTCCTTCGATGT
GGCGCTGAAGTCCTCCCTGCGGCAGGCGCCGGACGTCATCCTCATCGGGGAAATCCGCTCCAAGGAGACCATGGAGTTTG
CCATCTCTTTTGCCGAGACGGGGCACTTGTGTATGGCGACGCTGCACGCCAACAACGCCAACCAGGCGCTGGAGCGTATC
CTGCACCTGATCCCCGAAGACAAGCACCGCCAGCTGCTGTTCGATCTCTCCTTGAACCTCAAGGGCATCATAGCCCAGCA
ACTGATCCCCACCCGGGACGGTCAGGGTCGGCGGGCGGTGTTCGAAATCCTCGCCAACACGCCGCTGGTCAGCGACATAG
TGCGCAAGGGCGAGCTGCATCGCCTGAAAGAGGTCATGGCCCGCTCCAACGAGCAGGGCATGATGACCTTTGACCAGTCG
CTGTTCGAGCTGTATCGTCAGGGGCTTATCGGTTACAACGAGGCCCTGGCCTTCGCCGACTCGGCCAACGAGGTGCGCCT
CATGATCAAGCTCGCCGGTGGCAACAACATGAGTGCCGGTACCTTGGACAATGTGACCGTCGATTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (114-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Vibrio cholerae strain A1552	59.239	100	0.592
pilU	Acinetobacter baylyi ADP1	57.808	99.185	0.573
pilU	Pseudomonas stutzeri DSM 10701	59.091	95.652	0.565
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.857	95.109	0.389