Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABHF91_RS00170 Genome accession   NZ_CP158016
Coordinates   34507..36027 (-) Length   506 a.a.
NCBI ID   WP_409421493.1    Uniprot ID   -
Organism   Pseudaeromonas sp. ZJS20     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 29507..41027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHF91_RS00140 (ABHF91_00140) - 29849..30976 (+) 1128 WP_409421487.1 diguanylate cyclase domain-containing protein -
  ABHF91_RS00145 (ABHF91_00145) - 31004..31270 (+) 267 WP_409421488.1 YihD family protein -
  ABHF91_RS00150 (ABHF91_00150) - 31290..32270 (+) 981 WP_409421489.1 serine/threonine protein kinase -
  ABHF91_RS00155 (ABHF91_00155) - 32334..32942 (+) 609 WP_409421490.1 thiol:disulfide interchange protein DsbA/DsbL -
  ABHF91_RS00160 (ABHF91_00160) - 33038..33493 (+) 456 WP_409421491.1 DUF523 domain-containing protein -
  ABHF91_RS00165 (ABHF91_00165) - 33442..34377 (-) 936 WP_409421492.1 acyltransferase -
  ABHF91_RS00170 (ABHF91_00170) comM 34507..36027 (-) 1521 WP_409421493.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABHF91_RS00175 (ABHF91_00175) ilvG 36402..38048 (+) 1647 WP_409421494.1 acetolactate synthase 2 catalytic subunit -
  ABHF91_RS00180 (ABHF91_00180) ilvM 38045..38320 (+) 276 WP_409421495.1 acetolactate synthase 2 small subunit -
  ABHF91_RS00185 (ABHF91_00185) - 38337..39263 (+) 927 WP_409421496.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54666.69 Da        Isoelectric Point: 7.3401

>NTDB_id=1009508 ABHF91_RS00170 WP_409421493.1 34507..36027(-) (comM) [Pseudaeromonas sp. ZJS20]
MSLAVVFSRAALGIDAPEIAVEVHLSNGLPAFHIVGLPETSVKEARERVRSALLNANFEFPARRITVNLAPADLPKEGGR
FDLAIAVGILAASEQLPSQSLTQLEFLGELALTGEVRPILGALPAILAARQAGRQLILPEANGEEASLLPEAPVHTCRHL
LQLCAAMSGGAPLPVPRAAAELPLATHHGDLQDVIGQQVGKRALEIAASGQHHLLLIGPPGTGKSMLASRLAGLLPPLNE
DEAQQTAAIHSIGGLMPDHHAWRRRPYRAPHHTASAVALVGGGSQPKPGEISLAHNGILFLDELTEFERKVLDSLREPLE
SGNITISRASRQVEFPARFQLVAAMNPSPCGHAEGPQRRASPEQILRYLSKLSGPFLDRFDLAVEIPPLPPGSLSRPAER
GESSEQIRERVARTRALQLSRAGKLNAELDSRDLDHYCPLSAGDSQFLENAIHKLGLSLRAWHKLLRVARTLADMEQSPQ
IHRQHLAEALGYRAMDRLLHRLNQTV

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1009508 ABHF91_RS00170 WP_409421493.1 34507..36027(-) (comM) [Pseudaeromonas sp. ZJS20]
ATGTCATTAGCTGTTGTTTTTAGCCGTGCCGCCCTGGGGATCGACGCGCCGGAGATCGCCGTGGAGGTACACCTCTCCAA
CGGCCTGCCGGCCTTCCATATCGTCGGCCTGCCGGAAACCTCGGTGAAGGAGGCCAGGGAGCGGGTACGCAGCGCCCTGC
TCAATGCCAACTTCGAGTTTCCCGCCAGACGCATCACGGTCAACCTGGCGCCGGCGGACCTGCCCAAGGAGGGCGGCCGC
TTCGATCTGGCCATCGCCGTGGGCATACTGGCCGCCTCGGAGCAGCTGCCCAGCCAGTCACTAACCCAGCTGGAGTTTCT
CGGTGAACTGGCGCTGACCGGTGAGGTGCGGCCCATCCTGGGGGCGTTACCGGCCATACTGGCGGCCCGTCAGGCCGGGC
GACAGCTGATCCTGCCGGAAGCCAACGGCGAGGAAGCCAGCCTGCTGCCCGAGGCGCCGGTGCACACCTGCCGCCACCTG
CTGCAGCTGTGCGCGGCTATGAGCGGTGGCGCGCCCCTGCCGGTCCCCCGTGCCGCCGCCGAACTGCCCCTGGCCACCCA
TCACGGCGATCTGCAGGATGTCATCGGCCAGCAGGTGGGCAAGCGGGCCCTGGAGATCGCCGCCAGCGGTCAACACCATT
TGCTGCTGATAGGTCCGCCGGGTACCGGCAAGAGCATGCTGGCCAGCCGGCTGGCGGGTCTGCTGCCGCCGTTGAACGAA
GACGAGGCCCAGCAGACCGCGGCCATCCACTCCATCGGCGGCCTGATGCCCGATCACCACGCCTGGCGGCGGCGCCCCTA
CCGCGCCCCCCACCACACCGCCTCGGCGGTGGCCCTGGTGGGGGGCGGCAGCCAGCCCAAGCCCGGGGAGATCTCCCTGG
CCCACAACGGCATCCTGTTTCTCGACGAGCTGACGGAGTTCGAACGCAAGGTACTGGACAGCCTGCGAGAGCCCCTGGAG
AGCGGCAACATCACCATCTCCCGGGCCAGCCGGCAGGTGGAGTTCCCCGCCCGCTTCCAGCTGGTGGCGGCCATGAATCC
CAGCCCCTGCGGCCATGCCGAGGGGCCCCAGCGGCGAGCCAGTCCGGAGCAGATCCTGCGCTACCTGAGCAAGCTCTCCG
GCCCCTTCCTGGATCGCTTCGACCTGGCGGTGGAGATACCGCCCCTGCCGCCGGGCAGCCTCTCCCGTCCCGCCGAGCGA
GGCGAAAGCAGCGAGCAGATCCGTGAGCGGGTGGCCCGCACCCGGGCCTTGCAGCTGAGCCGAGCCGGCAAGCTCAATGC
CGAACTGGACAGCCGGGATCTGGACCATTACTGCCCGTTGAGCGCGGGCGACAGCCAGTTTCTGGAGAACGCCATCCACA
AGCTGGGGCTCTCCCTGCGGGCCTGGCACAAGCTGCTGCGGGTGGCCCGCACCCTGGCGGACATGGAGCAGAGTCCGCAG
ATCCACCGCCAGCACCTGGCCGAGGCCTTGGGCTACCGGGCCATGGATCGGCTGCTGCATCGCCTCAATCAGACGGTCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

59.245

99.407

0.589
  comM Vibrio cholerae strain A1552

59.245

99.407

0.589
  comM Glaesserella parasuis strain SC1401

58.661

100

0.589
  comM Haemophilus influenzae Rd KW20

58.465

100

0.587
  comM Legionella pneumophila str. Paris

51.613

98.024

0.506
  comM Legionella pneumophila strain ERS1305867

51.613

98.024

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

100

0.433

Multiple sequence alignment