Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABJ384_RS13650 Genome accession   NZ_CP157981
Coordinates   2827830..2829317 (+) Length   495 a.a.
NCBI ID   WP_349927968.1    Uniprot ID   A0AAU7SWW6
Organism   Acinetobacter sp. A1-4-2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2822830..2834317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ384_RS13625 (ABJ384_13615) ribD 2823710..2824813 (-) 1104 WP_349927963.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ABJ384_RS13630 (ABJ384_13620) nrdR 2824851..2825309 (-) 459 WP_086174158.1 transcriptional regulator NrdR -
  ABJ384_RS13635 (ABJ384_13625) amt 2825448..2826857 (-) 1410 WP_349927965.1 ammonium transporter -
  ABJ384_RS13640 (ABJ384_13630) glnK 2826916..2827254 (-) 339 WP_086174160.1 P-II family nitrogen regulator -
  ABJ384_RS13645 (ABJ384_13635) - 2827534..2827761 (+) 228 WP_086195417.1 accessory factor UbiK family protein -
  ABJ384_RS13650 (ABJ384_13640) comM 2827830..2829317 (+) 1488 WP_349927968.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABJ384_RS13655 (ABJ384_13645) - 2829373..2829501 (+) 129 WP_349927969.1 hypothetical protein -
  ABJ384_RS13660 (ABJ384_13650) - 2829604..2830365 (-) 762 WP_349927971.1 TorF family putative porin -
  ABJ384_RS13665 (ABJ384_13655) - 2831737..2833071 (+) 1335 WP_349927973.1 OprD family outer membrane porin -
  ABJ384_RS13670 (ABJ384_13660) ppa 2833157..2833693 (-) 537 WP_005233448.1 inorganic diphosphatase -
  ABJ384_RS13675 (ABJ384_13665) - 2833819..2834220 (-) 402 WP_300043878.1 MAPEG family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54568.57 Da        Isoelectric Point: 7.7536

>NTDB_id=1009494 ABJ384_RS13650 WP_349927968.1 2827830..2829317(+) (comM) [Acinetobacter sp. A1-4-2]
MSFAKIYTRCLLGLHAPLIEVEVHVSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPSKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENVTDQLEFIGELALDGQLRPISGILSIAIACQQSGHQLILPEQNAQDASQLPNFEVFAAHHL
KNVCEHLSRQHPLQQYQAPSSNPINQYKFDLADIKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLDM
QENLEVASIYSVANSSHPFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDIRCQCSPDAIKRYQNRISGPLLDRIDLHIDVPPLQAHELQATTPVE
NSHTVRERVIQAYNLQIQRQQCLNHALSPKQLEQFACLDAQAQKIMEMAQQRLNLSARAYHRVLRVARSIADLTQHTDIQ
SQHLTEALSYRAQQG

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1009494 ABJ384_RS13650 WP_349927968.1 2827830..2829317(+) (comM) [Acinetobacter sp. A1-4-2]
ATGTCTTTTGCTAAAATTTACACTCGATGTCTGCTTGGACTTCATGCACCTTTAATTGAGGTGGAAGTTCATGTCAGTCA
GGGCTTGCCTTCTTTAACCATTGTCGGGCTGCCTGAAGCAGCAGTTCGGGAAAGTAAAGACCGGGTCCGTTCTGCCATTA
TTAATAGTGGTTTCCAATTCCCCAGCAAACGTCTCACCATCAATTTAGCGCCTGCAGACTTACCCAAAGATGGCTCGCGC
CTGGATTTACCCATTGCTTTGGGGATTTTAATCGCTTCAGGCCAACTACCTGAAAATGTGACAGATCAGCTGGAATTTAT
TGGTGAACTGGCCCTGGATGGTCAACTTCGTCCCATCAGCGGTATTTTAAGCATTGCCATTGCCTGCCAGCAGTCTGGAC
ATCAACTGATTTTGCCGGAACAGAATGCCCAAGATGCTTCGCAACTGCCCAATTTTGAAGTATTTGCTGCCCATCATCTC
AAAAATGTCTGTGAACATTTATCTAGACAACATCCACTTCAGCAATATCAAGCCCCTAGCAGCAATCCAATCAATCAGTA
CAAATTTGATTTAGCCGATATCAAAGGTCAATTGCGCCCGCGACGGGCTTTGGAAATTGCTGCCGCTGGTGGACATTCAC
TATTGTTTAAAGGCCCGCCCGGTACAGGAAAAACACTGTTGGCTTCACGGCTGGCCAGTATTTTGCCCCCTCTGGACATG
CAAGAAAATCTAGAAGTAGCTAGTATTTATTCGGTTGCCAATAGCTCGCATCCCTTTGGGCAGCGCCCTTTTCGTGCGCC
ACATCATACCGCTTCCGCAATTGCCTTGGTGGGTGGGGGTTCCCATCCCAAACCGGGGGAAATTACGCTGGCTCATTTGG
GCGTATTATTTTTAGATGAGCTGCCTGAATTTGATCGTAAGGTCTTGGAAGTATTAAGACAGCCGCTCGAATCCAAGGAA
ATAGTGATTTCCCGTGCCTCCAGGCAAATTACCTTCCCGGCCAACTTTCAACTGATTGCAGCAATGAATCCCTGCCCTTG
TGGTTATGCTTTTAATCAGGATATCCGCTGTCAATGTTCCCCAGATGCGATTAAACGTTATCAAAACCGGATTTCAGGCC
CCCTCTTGGACCGGATTGACCTGCATATTGATGTGCCGCCTTTACAAGCCCATGAATTACAGGCGACTACACCAGTTGAA
AACTCACACACGGTTCGGGAACGGGTAATTCAAGCCTATAATTTACAAATCCAGCGACAACAATGCCTGAATCATGCTTT
AAGTCCCAAACAGCTGGAACAGTTTGCATGCCTTGATGCGCAGGCACAGAAAATTATGGAAATGGCCCAGCAACGCTTAA
ACCTGTCTGCCCGGGCTTATCATCGGGTATTACGTGTCGCGCGAAGCATTGCCGATTTAACCCAACATACTGACATTCAA
AGCCAGCATTTAACTGAAGCGCTGTCCTATCGGGCACAACAGGGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51

100

0.515
  comM Glaesserella parasuis strain SC1401

50.8

100

0.513
  comM Vibrio cholerae strain A1552

50.704

100

0.509
  comM Vibrio campbellii strain DS40M4

50.806

100

0.509
  comM Legionella pneumophila str. Paris

50.202

100

0.503
  comM Legionella pneumophila strain ERS1305867

50.202

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.469

Multiple sequence alignment