Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   ABJ384_RS01605 Genome accession   NZ_CP157981
Coordinates   343664..344143 (+) Length   159 a.a.
NCBI ID   WP_349928518.1    Uniprot ID   A0AAU7SYC2
Organism   Acinetobacter sp. A1-4-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338664..349143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ384_RS01595 (ABJ384_01595) - 338964..339770 (+) 807 WP_349928514.1 hypothetical protein -
  ABJ384_RS01600 (ABJ384_01600) pilY1 339787..343647 (+) 3861 WP_349928516.1 PilC/PilY family type IV pilus protein Machinery gene
  ABJ384_RS01605 (ABJ384_01605) comE 343664..344143 (+) 480 WP_349928518.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ABJ384_RS01610 (ABJ384_01610) comF 344137..344580 (+) 444 WP_349928520.1 type IV pilin protein Machinery gene
  ABJ384_RS01615 (ABJ384_01615) rpsP 344725..344982 (+) 258 WP_086197177.1 30S ribosomal protein S16 -
  ABJ384_RS01620 (ABJ384_01620) rimM 345008..345556 (+) 549 WP_166168629.1 ribosome maturation factor RimM -
  ABJ384_RS01625 (ABJ384_01625) trmD 345599..346348 (+) 750 WP_349928523.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABJ384_RS01630 (ABJ384_01630) rplS 346518..346892 (+) 375 WP_086197174.1 50S ribosomal protein L19 -
  ABJ384_RS01635 (ABJ384_01635) - 346960..347925 (-) 966 WP_349928525.1 triacylglycerol lipase -
  ABJ384_RS01640 (ABJ384_01640) - 348098..349081 (-) 984 WP_349928527.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17644.05 Da        Isoelectric Point: 8.8803

>NTDB_id=1009465 ABJ384_RS01605 WP_349928518.1 343664..344143(+) (comE) [Acinetobacter sp. A1-4-2]
MGYANGITLIKNGFTLIEVMVVVVILSIIAAIALPSYSAYTRKAVASQAEQEIQKIAEQLERHKSRNFSYKGFDPGYIYG
QASPMTSVSVKDYTLTIRDLDSQKLLTSTDQDMRGRGWAIKAETTDNQNYNFLMTSTGIRCKSKASISSYQACSGNETW

Nucleotide


Download         Length: 480 bp        

>NTDB_id=1009465 ABJ384_RS01605 WP_349928518.1 343664..344143(+) (comE) [Acinetobacter sp. A1-4-2]
ATGGGTTATGCTAATGGTATTACTCTTATTAAAAATGGATTCACACTTATTGAGGTGATGGTTGTAGTAGTTATATTGTC
TATTATTGCCGCGATAGCATTACCTTCTTATTCAGCCTACACTCGTAAGGCAGTTGCATCTCAAGCTGAGCAAGAAATCC
AGAAGATAGCTGAACAACTGGAACGTCATAAATCGCGTAATTTTAGTTATAAAGGTTTTGACCCAGGTTATATTTATGGG
CAAGCAAGTCCAATGACATCGGTATCAGTAAAAGACTATACACTAACCATACGTGATTTGGATTCACAAAAATTACTTAC
CTCAACGGATCAAGATATGCGAGGACGAGGTTGGGCGATTAAGGCTGAAACGACGGATAATCAAAATTATAACTTTCTAA
TGACTAGTACAGGTATTCGCTGTAAATCTAAGGCATCCATTTCAAGCTATCAAGCATGCTCAGGGAATGAAACATGGTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

48.214

100

0.509
  pilY2 Acinetobacter baumannii D1279779

42.857

92.453

0.396

Multiple sequence alignment