Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   ABJ384_RS01600 Genome accession   NZ_CP157981
Coordinates   339787..343647 (+) Length   1286 a.a.
NCBI ID   WP_349928516.1    Uniprot ID   A0AAU7SXM2
Organism   Acinetobacter sp. A1-4-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334787..348647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ384_RS01565 (ABJ384_01565) rpoZ 334827..335108 (-) 282 WP_004896248.1 DNA-directed RNA polymerase subunit omega -
  ABJ384_RS01570 (ABJ384_01570) gmk 335185..335808 (-) 624 WP_349928505.1 guanylate kinase -
  ABJ384_RS01575 (ABJ384_01575) ispH 335943..336893 (+) 951 WP_349928507.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABJ384_RS01580 (ABJ384_01580) - 337056..337538 (+) 483 WP_349928509.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABJ384_RS01585 (ABJ384_01585) pilV 337538..338044 (+) 507 WP_349928511.1 type IV pilus modification protein PilV Machinery gene
  ABJ384_RS01590 (ABJ384_01590) pilW 338044..338967 (+) 924 WP_349928513.1 PilW family protein Machinery gene
  ABJ384_RS01595 (ABJ384_01595) - 338964..339770 (+) 807 WP_349928514.1 hypothetical protein -
  ABJ384_RS01600 (ABJ384_01600) pilY1 339787..343647 (+) 3861 WP_349928516.1 PilC/PilY family type IV pilus protein Machinery gene
  ABJ384_RS01605 (ABJ384_01605) comE 343664..344143 (+) 480 WP_349928518.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ABJ384_RS01610 (ABJ384_01610) comF 344137..344580 (+) 444 WP_349928520.1 type IV pilin protein Machinery gene
  ABJ384_RS01615 (ABJ384_01615) rpsP 344725..344982 (+) 258 WP_086197177.1 30S ribosomal protein S16 -
  ABJ384_RS01620 (ABJ384_01620) rimM 345008..345556 (+) 549 WP_166168629.1 ribosome maturation factor RimM -
  ABJ384_RS01625 (ABJ384_01625) trmD 345599..346348 (+) 750 WP_349928523.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABJ384_RS01630 (ABJ384_01630) rplS 346518..346892 (+) 375 WP_086197174.1 50S ribosomal protein L19 -
  ABJ384_RS01635 (ABJ384_01635) - 346960..347925 (-) 966 WP_349928525.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 1286 a.a.        Molecular weight: 138961.03 Da        Isoelectric Point: 7.6523

>NTDB_id=1009464 ABJ384_RS01600 WP_349928516.1 339787..343647(+) (pilY1) [Acinetobacter sp. A1-4-2]
MKKHTHTSSLVSRLKNMNLHPLAIACMSFIGTYALTASVVQASDLQIYATPEAGQKTIVMMLDTSGSMGDSDSGQTGSRL
YRLKQGMYKLLESNDGNLANTKVGLGRFWGSSSRDGGYILVEAAKMGPVGSAHRQKLKTAIDGLKAEDWTPTAQAYVEAA
AYLMGTNSLMRATIKVDAYQTLTRSEKIQNGECPSNRPYYNSADNICYEKYSSWKGYSGKTATPLQLEKWGDITRNYKCG
SLAITNFTNETQSCNSSGWTEVSLIPDEYITRGGTAITNGTLYTFEEIQAQPNNYSGFTRATKGAIRDDLNYISPLPEVS
KRQSCDGQGVYILSDGQANSSGESIVKPMMQAALNNKSFSCPSSGGLSSSGDSAWHCMGEFAKYLFDKTKNPTGVSIQTA
FVGFGNDFNGLSKSHVQQACQISSRTQDDRRSDDACSPTANTVYKLQKPGFGNGGYFETQSESGVTESVIQFIKNLGDTK
IEPLPTGAISVPVDALNPNGFQPYGYLRALSPNPGQPVLVWAGNLKKYGIYNGALADATKTVFNDLGKFDLTTSDLWNNT
GVADGGLVDQGGVYWNLPMPTQAVAAVAGNAGANIRAVPAIMANPNSLRNLFTDVEAVSNDTLTPKTNGTLLEIPEKTSG
ANTNGTYVLDKFKNQTVLKDFPVLLKYKLLNYLGYNLDISATPNTLPTTLSVPTKPFVSLGGSIHSFPVQLTYSGELDAN
GDLTSVRKQSVLYGSMEGGLHIIDAKTGVEQTVFVPAEILNNPESSKALRFGEAGSGTDMIKHGVSGAWVADTAYTTQRG
ISSDASAVVAKQMRVYGGMRMGGKSYYGMDVLDPTKPKLLFRIGADQTAFSRMGQTWSKPVIANIRYNNKIRRVLILGGG
YDACYEYPRFKFGTANPAEFGGGCNKSVAEGNAVYIVDAETGERIWWTSNTGSNKNNDNLKHSVVTRVSTLDRDGDGLVD
HIYFGDLGGQVFRIDLNNKKDTPTANFGHNVIRLANLATTESGTIITNGDAPRFYQPPTLTIHDEGNETFILVAIASGDR
STPLDVAPSKGRETIKPFDALQSRPTNKVYGLIDRDFVERDLYKSTYTAFKSNDITLNQLQKNPQNLASFTAVKNTFFGG
SPKHGWYRSLSSNYLGNEVASRTPGGIKAFEEEPIAIKDNLFIPVYDPEGTGVEDADPCQPRIVGESDRQQYCLPYGACY
KDGDKDSEAEKRTGMVMLNGVNQNVLGAGIRGITLGPMGGGSGGGKTDLNSCGTLTLIGNIKGAGEWKCSRILNPIRWYE
KNVAPK

Nucleotide


Download         Length: 3861 bp        

>NTDB_id=1009464 ABJ384_RS01600 WP_349928516.1 339787..343647(+) (pilY1) [Acinetobacter sp. A1-4-2]
ATGAAAAAACATACACATACCTCATCACTTGTCTCAAGGCTTAAAAATATGAATTTACATCCACTTGCAATTGCTTGCAT
GTCTTTTATTGGGACTTATGCCTTAACAGCTTCTGTTGTACAAGCAAGCGATTTGCAGATTTATGCTACGCCTGAGGCAG
GACAAAAGACTATTGTGATGATGTTGGATACCTCTGGTTCTATGGGGGATTCTGATAGTGGGCAAACAGGGAGTCGATTG
TATAGACTTAAACAAGGGATGTATAAATTATTAGAAAGTAATGATGGTAATCTTGCTAATACAAAAGTCGGGTTAGGGCG
TTTTTGGGGATCAAGTAGTCGAGATGGTGGTTACATTTTGGTAGAAGCAGCCAAAATGGGACCTGTTGGTTCTGCACATA
GACAGAAGCTAAAAACGGCAATTGATGGATTAAAAGCAGAGGATTGGACGCCAACTGCTCAAGCATATGTTGAAGCTGCT
GCATACCTTATGGGTACCAACAGTTTGATGCGAGCTACTATCAAAGTTGATGCTTATCAGACTTTGACAAGATCTGAAAA
AATCCAAAATGGTGAATGTCCTAGTAATAGGCCATATTATAATTCTGCCGATAATATTTGCTATGAAAAATATAGTAGTT
GGAAAGGTTATTCTGGTAAAACGGCAACCCCGCTTCAGTTGGAGAAATGGGGAGATATTACACGCAATTATAAGTGTGGC
AGTTTAGCTATTACAAATTTTACAAACGAAACTCAAAGTTGTAATTCTAGTGGTTGGACAGAAGTAAGTTTAATTCCTGA
TGAATATATAACACGGGGTGGTACTGCAATTACGAATGGTACTTTATATACCTTTGAAGAAATTCAGGCTCAGCCGAATA
ACTATAGTGGTTTTACAAGAGCAACAAAAGGTGCGATTCGTGATGATCTAAATTATATTTCGCCTTTACCTGAAGTCTCT
AAAAGACAAAGTTGTGATGGGCAGGGAGTGTATATTTTATCTGATGGTCAAGCAAACAGCTCTGGTGAAAGTATCGTAAA
GCCGATGATGCAAGCAGCTTTAAATAATAAGAGTTTTAGTTGTCCTTCTTCGGGTGGATTAAGCAGCAGTGGAGATTCTG
CTTGGCATTGTATGGGAGAGTTTGCTAAGTATTTATTTGATAAAACTAAAAACCCAACTGGTGTTTCGATTCAAACAGCA
TTTGTGGGTTTTGGTAATGATTTTAATGGATTGTCAAAATCACATGTACAGCAAGCATGTCAAATTAGTTCACGTACGCA
GGATGATCGTCGTTCTGATGATGCTTGTTCACCAACTGCTAATACTGTTTATAAATTGCAAAAACCCGGTTTCGGTAATG
GTGGCTATTTTGAAACACAGAGTGAATCCGGCGTAACTGAAAGTGTGATCCAATTTATTAAAAACCTTGGTGATACTAAA
ATTGAACCTTTACCGACAGGAGCAATTTCAGTTCCAGTCGATGCTCTCAACCCTAACGGTTTTCAGCCTTATGGATACTT
ACGAGCATTATCACCTAATCCGGGGCAGCCTGTACTTGTTTGGGCGGGAAACTTAAAGAAATATGGCATTTATAATGGTG
CATTAGCTGATGCCACGAAAACAGTATTTAATGATTTAGGTAAATTTGATTTAACAACCAGTGACTTATGGAATAATACA
GGGGTTGCAGATGGTGGGTTGGTTGATCAAGGCGGTGTGTATTGGAATTTACCGATGCCAACTCAAGCAGTTGCTGCTGT
AGCAGGAAACGCTGGCGCAAATATACGTGCGGTACCTGCTATTATGGCAAATCCAAATAGCTTAAGAAATTTATTTACAG
ATGTAGAGGCTGTGTCGAATGATACTCTTACGCCTAAGACAAATGGGACTTTACTTGAAATACCTGAGAAAACCAGTGGG
GCTAATACAAATGGTACTTATGTATTAGATAAATTTAAAAATCAGACTGTATTAAAAGATTTTCCTGTATTATTAAAATA
CAAGCTATTAAATTACTTAGGGTATAACTTAGATATATCGGCTACTCCTAACACGTTGCCTACCACTTTATCCGTACCTA
CTAAACCATTTGTGAGCCTTGGAGGAAGTATACATTCTTTCCCTGTACAGTTGACCTATTCCGGTGAATTGGATGCTAAT
GGTGATTTAACCTCGGTACGTAAACAGTCAGTTTTATATGGCAGTATGGAGGGCGGACTGCATATAATAGATGCTAAAAC
AGGTGTAGAACAAACAGTCTTTGTTCCAGCAGAAATTTTAAACAACCCAGAATCATCAAAAGCATTGAGGTTTGGTGAAG
CAGGTTCTGGAACAGACATGATTAAGCATGGAGTAAGTGGTGCTTGGGTTGCAGATACAGCATATACAACTCAACGAGGC
ATAAGTTCTGATGCTTCAGCGGTTGTTGCCAAACAAATGCGAGTCTATGGTGGTATGCGTATGGGGGGTAAAAGCTACTA
TGGAATGGATGTATTAGATCCAACAAAACCTAAACTTTTATTTAGAATTGGCGCAGATCAAACAGCATTTTCAAGAATGG
GGCAAACTTGGTCTAAACCTGTTATTGCCAATATTCGCTATAATAATAAAATTCGCCGTGTGCTCATTCTTGGCGGTGGT
TATGATGCTTGTTATGAATATCCTAGATTTAAATTTGGGACAGCTAATCCAGCTGAATTTGGTGGAGGATGCAATAAATC
TGTTGCAGAAGGAAATGCAGTTTATATTGTCGATGCAGAAACTGGTGAACGTATTTGGTGGACAAGTAATACTGGATCGA
ATAAAAATAATGATAATTTAAAACATAGTGTGGTTACTCGTGTCAGTACTTTAGACCGAGATGGTGATGGCCTTGTTGAT
CATATCTATTTTGGTGATTTGGGAGGGCAAGTATTCCGTATCGATTTAAACAATAAAAAAGATACACCTACAGCAAATTT
TGGTCATAATGTCATTCGTTTGGCAAATTTGGCAACTACTGAGTCTGGAACAATTATTACCAATGGTGATGCCCCTCGTT
TCTATCAGCCACCAACCCTTACGATTCATGATGAAGGTAATGAAACTTTTATTCTAGTGGCAATTGCTTCTGGTGATCGT
AGTACACCACTAGATGTTGCTCCAAGCAAAGGTCGCGAAACAATTAAACCTTTTGATGCATTACAAAGTCGGCCAACCAA
CAAAGTATATGGCTTGATTGATCGAGACTTTGTTGAACGTGATTTGTATAAATCTACTTATACGGCATTTAAGTCAAATG
ATATTACGTTAAATCAACTACAAAAAAATCCACAAAATTTAGCTTCTTTTACAGCGGTAAAAAACACTTTCTTTGGAGGG
AGTCCTAAACATGGATGGTATCGTTCATTGTCGAGTAATTATTTAGGTAATGAGGTTGCAAGTCGTACACCAGGTGGAAT
TAAAGCTTTTGAAGAAGAACCTATTGCGATTAAGGATAACTTATTTATACCTGTATATGATCCAGAAGGTACGGGTGTAG
AAGATGCTGATCCATGTCAGCCACGTATTGTAGGTGAGTCTGATCGTCAACAATATTGTTTACCTTACGGTGCTTGTTAT
AAGGATGGTGATAAAGATAGCGAAGCTGAAAAACGTACAGGGATGGTTATGCTGAATGGTGTGAACCAAAATGTACTTGG
TGCAGGTATACGTGGAATAACATTAGGTCCTATGGGTGGAGGTTCTGGTGGTGGAAAAACTGATCTAAATAGCTGTGGAA
CGTTAACGTTGATAGGTAATATCAAAGGGGCGGGAGAGTGGAAATGCTCGCGTATTCTTAACCCAATACGATGGTATGAA
AAAAATGTCGCTCCTAAATAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(713-983)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

50.599

100

0.526

Multiple sequence alignment