Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | ABJ384_RS01610 | Genome accession | NZ_CP157981 |
| Coordinates | 344137..344580 (+) | Length | 147 a.a. |
| NCBI ID | WP_349928520.1 | Uniprot ID | A0AAU7SXR8 |
| Organism | Acinetobacter sp. A1-4-2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 339137..349580
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABJ384_RS01600 (ABJ384_01600) | pilY1 | 339787..343647 (+) | 3861 | WP_349928516.1 | PilC/PilY family type IV pilus protein | Machinery gene |
| ABJ384_RS01605 (ABJ384_01605) | comE | 343664..344143 (+) | 480 | WP_349928518.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| ABJ384_RS01610 (ABJ384_01610) | comF | 344137..344580 (+) | 444 | WP_349928520.1 | type IV pilin protein | Machinery gene |
| ABJ384_RS01615 (ABJ384_01615) | rpsP | 344725..344982 (+) | 258 | WP_086197177.1 | 30S ribosomal protein S16 | - |
| ABJ384_RS01620 (ABJ384_01620) | rimM | 345008..345556 (+) | 549 | WP_166168629.1 | ribosome maturation factor RimM | - |
| ABJ384_RS01625 (ABJ384_01625) | trmD | 345599..346348 (+) | 750 | WP_349928523.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ABJ384_RS01630 (ABJ384_01630) | rplS | 346518..346892 (+) | 375 | WP_086197174.1 | 50S ribosomal protein L19 | - |
| ABJ384_RS01635 (ABJ384_01635) | - | 346960..347925 (-) | 966 | WP_349928525.1 | triacylglycerol lipase | - |
| ABJ384_RS01640 (ABJ384_01640) | - | 348098..349081 (-) | 984 | WP_349928527.1 | triacylglycerol lipase | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 15990.31 Da Isoelectric Point: 7.7706
>NTDB_id=1009466 ABJ384_RS01610 WP_349928520.1 344137..344580(+) (comF) [Acinetobacter sp. A1-4-2]
MVVQFKRGFTLIEILIVVVIIGILGMIAYPSYTDYVIKTKRVDAQSKMIEISQKLMQYKATNGSFAGASLTDNKIYGSAI
FPQTGDTSYTFTLDIPNANSWTLIAEPATSSTQDGNGWICLNNQGQKFWAKGATACALSAISNWDGS
MVVQFKRGFTLIEILIVVVIIGILGMIAYPSYTDYVIKTKRVDAQSKMIEISQKLMQYKATNGSFAGASLTDNKIYGSAI
FPQTGDTSYTFTLDIPNANSWTLIAEPATSSTQDGNGWICLNNQGQKFWAKGATACALSAISNWDGS
Nucleotide
Download Length: 444 bp
>NTDB_id=1009466 ABJ384_RS01610 WP_349928520.1 344137..344580(+) (comF) [Acinetobacter sp. A1-4-2]
ATGGTAGTTCAATTTAAAAGAGGATTTACCCTCATCGAAATTTTAATAGTTGTTGTAATTATCGGAATCTTGGGCATGAT
TGCCTATCCATCTTATACTGATTACGTTATTAAGACTAAGCGTGTTGATGCGCAAAGTAAAATGATTGAAATCTCTCAGA
AACTGATGCAATACAAAGCCACAAATGGTAGCTTTGCAGGTGCATCGTTAACCGATAATAAAATATATGGTAGTGCGATA
TTTCCTCAAACAGGTGATACAAGTTATACATTTACTTTGGATATACCGAATGCTAACTCATGGACTCTTATTGCAGAACC
CGCAACCTCAAGCACACAGGATGGTAATGGATGGATTTGTTTAAATAATCAAGGGCAAAAATTCTGGGCCAAGGGTGCTA
CAGCGTGTGCACTGTCAGCCATCTCAAACTGGGATGGCAGCTAA
ATGGTAGTTCAATTTAAAAGAGGATTTACCCTCATCGAAATTTTAATAGTTGTTGTAATTATCGGAATCTTGGGCATGAT
TGCCTATCCATCTTATACTGATTACGTTATTAAGACTAAGCGTGTTGATGCGCAAAGTAAAATGATTGAAATCTCTCAGA
AACTGATGCAATACAAAGCCACAAATGGTAGCTTTGCAGGTGCATCGTTAACCGATAATAAAATATATGGTAGTGCGATA
TTTCCTCAAACAGGTGATACAAGTTATACATTTACTTTGGATATACCGAATGCTAACTCATGGACTCTTATTGCAGAACC
CGCAACCTCAAGCACACAGGATGGTAATGGATGGATTTGTTTAAATAATCAAGGGCAAAAATTCTGGGCCAAGGGTGCTA
CAGCGTGTGCACTGTCAGCCATCTCAAACTGGGATGGCAGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Acinetobacter baylyi ADP1 |
50.345 |
98.639 |
0.497 |
| pilE | Acinetobacter baumannii D1279779 |
50 |
95.238 |
0.476 |