Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABJ384_RS00735 Genome accession   NZ_CP157981
Coordinates   168299..168886 (+) Length   195 a.a.
NCBI ID   WP_180041926.1    Uniprot ID   A0AAU7SX75
Organism   Acinetobacter sp. A1-4-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 163299..173886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ384_RS00710 (ABJ384_00710) - 163716..164069 (+) 354 WP_349929685.1 DUF1304 domain-containing protein -
  ABJ384_RS00715 (ABJ384_00715) - 164134..164474 (+) 341 Protein_137 GlpM family protein -
  ABJ384_RS00720 (ABJ384_00720) tenA 164739..165410 (-) 672 WP_349928288.1 thiaminase II -
  ABJ384_RS00725 (ABJ384_00725) - 165650..166735 (+) 1086 WP_349929686.1 DUF475 domain-containing protein -
  ABJ384_RS00730 (ABJ384_00730) - 166883..168247 (+) 1365 WP_349928289.1 MFS transporter -
  ABJ384_RS00735 (ABJ384_00735) ssb 168299..168886 (+) 588 WP_180041926.1 single-stranded DNA-binding protein Machinery gene
  ABJ384_RS00740 (ABJ384_00740) - 168968..169432 (-) 465 WP_349928292.1 hotdog fold domain-containing protein -
  ABJ384_RS00745 (ABJ384_00745) - 169572..170204 (+) 633 WP_349929687.1 TetR/AcrR family transcriptional regulator -
  ABJ384_RS00750 (ABJ384_00750) ahpC 170362..170925 (+) 564 WP_349928294.1 alkyl hydroperoxide reductase subunit C -
  ABJ384_RS00755 (ABJ384_00755) - 171192..172067 (+) 876 WP_349928296.1 pirin family protein -
  ABJ384_RS00760 (ABJ384_00760) - 172494..173792 (+) 1299 WP_349928298.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21560.16 Da        Isoelectric Point: 6.4817

>NTDB_id=1009455 ABJ384_RS00735 WP_180041926.1 168299..168886(+) (ssb) [Acinetobacter sp. A1-4-2]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSNRQQGEQAASGDNSGYNQPRFNNNQGGYNNNNNNQGGYGNQGGYNNNQNN
QGNSYGNNNPGGFAPKQQPAPAAAAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1009455 ABJ384_RS00735 WP_180041926.1 168299..168886(+) (ssb) [Acinetobacter sp. A1-4-2]
ATGCGTGGTGTTAATAAAGTTATATTAGTTGGAACTTTAGGTAAAGATCCTGAAACCAAAACTTTTCCAAATGGTGGTTC
TCTGACTCAGTTTTCAATTGCAACCAGCGATTCGTGGACTGATAAAAATACCGGTGAGCGTAAAGAACAAACTGAATGGC
ATCGTATTGTGTTGCATAACCGCTTAGGTGAAATTGCACAGCAATATCTACGTAAGGGTTCAAAAGTTTATATTGAAGGT
TCATTGCGTACGCGTCAGTGGACAGACCAAAGTGGTCAGGAACGCTACACCACAGAAATTCGTGGTGAACAGATGCAAAT
GCTGGACAGTAATCGTCAGCAAGGTGAACAAGCTGCGAGTGGCGATAACTCGGGTTATAACCAGCCACGTTTCAACAATA
ATCAAGGCGGCTATAACAACAATAATAACAACCAAGGTGGTTATGGCAATCAGGGGGGGTATAACAACAACCAGAACAAT
CAGGGTAATAGTTATGGCAATAACAACCCGGGTGGTTTTGCGCCAAAACAACAGCCTGCACCAGCAGCAGCTGCACCGGC
AGATTTAGATGATGATTTACCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.041

100

0.523
  ssb Vibrio cholerae strain A1552

45.5

100

0.467
  ssb Neisseria meningitidis MC58

39.594

100

0.4
  ssb Neisseria gonorrhoeae MS11

39.086

100

0.395

Multiple sequence alignment