Detailed information NTG1009307

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ABNK63_RS04110
• Genome accession: NZ_CP157948
• Coordinates: 942504..943673 (+)
• Length: 389 a.a.
• NCBI ID: WP_204110692.1
• Uniprot ID: -
• Organism: Rhodanobacter sp. IGA1.0
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 937504..948673

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNK63_RS04090 (ABNK63_04085)	-	937834..938643 (+)	810	WP_350016767.1	cobalamin-binding protein	-
ABNK63_RS04095 (ABNK63_04090)	-	939535..940110 (-)	576	WP_350016768.1	YggT family protein	-
ABNK63_RS04100 (ABNK63_04095)	proC	940107..940931 (-)	825	WP_350016769.1	pyrroline-5-carboxylate reductase	-
ABNK63_RS04105 (ABNK63_04100)	pilT	941313..942350 (+)	1038	WP_007809667.1	type IV pilus twitching motility protein PilT	Machinery gene
ABNK63_RS04110 (ABNK63_04105)	pilU	942504..943673 (+)	1170	WP_204110692.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ABNK63_RS04115 (ABNK63_04110)	-	943757..944125 (-)	369	WP_007809653.1	BON domain-containing protein	-
ABNK63_RS04120 (ABNK63_04115)	-	944361..946142 (-)	1782	WP_350016770.1	hypothetical protein	-
ABNK63_RS04125 (ABNK63_04120)	-	946227..947153 (-)	927	WP_007809648.1	aspartate carbamoyltransferase catalytic subunit	-
ABNK63_RS04130 (ABNK63_04125)	ruvX	947183..947632 (-)	450	WP_007809646.1	Holliday junction resolvase RuvX	-
ABNK63_RS04135 (ABNK63_04130)	-	947629..948198 (-)	570	WP_007809643.1	YqgE/AlgH family protein	-

Sequence

Protein

• Length: 389 a.a.
• Molecular weight: 43286.77 Da
• Isoelectric Point: 6.7734

>NTDB_id=1009307 ABNK63_RS04110 WP_204110692.1 942504..943673(+) (pilU) [Rhodanobacter sp. IGA1.0]
MSDFDFTSFLKLMVHKKASDLFITAGVAPSMKVQGRIVPITQSPLSVQQARDMVLNVMTPGQREEFEKTHECQFAISAQG
VGRFRVSCFYQRNCVGMVLRRIESKIPSIEELTLPPVLKQLAMTKRGIIVFVGATGSGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEYVHKHEGCIITQREVGIDTDSWDNALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRILHFFPEDRRQQLLMDLSLNLKGIVAQMLIPTPDGKARRVAVEVLLGTPLVQDYIRQGEIHKLKEVMKESTLLGMKTF
DQALVELYHAGEISYEDALRYADSSNEVRLRIKLAQGGDAHTLSQGLDGVELEETRDGNNLGGANFLNR

Nucleotide

• Length: 1170 bp

>NTDB_id=1009307 ABNK63_RS04110 WP_204110692.1 942504..943673(+) (pilU) [Rhodanobacter sp. IGA1.0]
ATGAGCGATTTTGATTTCACCTCCTTCCTGAAGCTGATGGTGCACAAGAAGGCGTCCGACCTGTTCATCACCGCGGGCGT
GGCGCCGTCGATGAAGGTGCAGGGACGCATCGTGCCGATCACGCAGAGCCCGCTCAGCGTGCAGCAGGCACGCGACATGG
TGCTCAACGTGATGACGCCGGGCCAGCGCGAGGAGTTCGAGAAGACCCACGAGTGCCAGTTCGCGATCTCCGCCCAGGGC
GTGGGGCGCTTCCGCGTCTCGTGCTTCTACCAGCGCAACTGCGTCGGCATGGTGCTGCGCCGGATCGAGTCGAAGATTCC
GTCGATCGAGGAGCTGACCCTGCCGCCGGTGCTCAAGCAGCTGGCGATGACCAAGCGCGGCATCATCGTCTTCGTGGGTG
CCACCGGCTCGGGCAAATCGACCTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAATTCGACCGGCCACATCATCACC
ATCGAGGACCCGATCGAATACGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGACACCGATAG
CTGGGACAACGCCCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGTACCCGCGAGGGCA
TGGACCACGCGATTGCCTTTGCCGAAACGGGCCACCTGGTGCTGTGCACCCTGCACGCGAACAACGCGAACCAGGCGATG
GACCGCATCCTGCACTTCTTCCCGGAAGACCGTCGCCAGCAGTTGTTGATGGACCTTTCGCTGAACCTGAAGGGCATCGT
GGCGCAGATGCTGATCCCCACCCCGGACGGCAAGGCGCGCCGCGTGGCGGTGGAAGTGCTGCTGGGCACGCCGCTGGTGC
AGGACTACATCCGCCAGGGCGAGATCCACAAGCTGAAGGAAGTGATGAAGGAGTCCACCCTGTTGGGCATGAAGACGTTC
GACCAGGCCCTGGTCGAGCTCTATCACGCTGGCGAGATCAGCTACGAGGACGCGTTGCGTTACGCCGACAGCTCCAACGA
GGTGCGCCTGCGCATCAAGCTGGCGCAGGGCGGCGATGCGCATACCCTGTCGCAGGGCCTGGACGGCGTGGAACTGGAGG
AGACGCGCGACGGGAACAACCTTGGCGGTGCGAATTTCCTCAATCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (117-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	67.112	96.144	0.645
pilU	Acinetobacter baylyi ADP1	63.764	91.517	0.584
pilU	Vibrio cholerae strain A1552	53.09	91.517	0.486
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.054	95.63	0.383