Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABNK63_RS01645 Genome accession   NZ_CP157948
Coordinates   387164..388657 (+) Length   497 a.a.
NCBI ID   WP_083845887.1    Uniprot ID   A0AAU7QLH6
Organism   Rhodanobacter sp. IGA1.0     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 382164..393657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNK63_RS01625 (ABNK63_01620) - 383085..383309 (-) 225 WP_007804247.1 hypothetical protein -
  ABNK63_RS01630 (ABNK63_01625) - 383326..385764 (-) 2439 WP_350016509.1 ribonucleoside-diphosphate reductase subunit alpha -
  ABNK63_RS01635 (ABNK63_01630) glnK 386221..386559 (-) 339 WP_007804243.1 P-II family nitrogen regulator -
  ABNK63_RS01640 (ABNK63_01635) - 386742..387002 (+) 261 WP_040672624.1 accessory factor UbiK family protein -
  ABNK63_RS01645 (ABNK63_01640) comM 387164..388657 (+) 1494 WP_083845887.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABNK63_RS01650 (ABNK63_01645) - 388737..390524 (+) 1788 WP_007804237.1 sodium:proton antiporter -
  ABNK63_RS01655 (ABNK63_01650) aceA 390617..391915 (-) 1299 WP_007804234.1 isocitrate lyase -
  ABNK63_RS01660 (ABNK63_01655) aceB 391964..393577 (-) 1614 WP_007804232.1 malate synthase A -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53574.39 Da        Isoelectric Point: 7.2399

>NTDB_id=1009303 ABNK63_RS01645 WP_083845887.1 387164..388657(+) (comM) [Rhodanobacter sp. IGA1.0]
MSLAVTLSRAQEGIAAPQVMVEVHLSGGLPCTNIVGLPEAAVREARDRVRVAIQNTAFEYPGRRVTVNLAPAELPKDGGR
FDLPIALGILAASGQVPREKLDDCEFLGELALSGTLRSVSGVLPALLRARARGRRVVVPRENAAEAALVADVDVRVADTL
AEVCGWLRGAHELSMPVGIPSNGGAEDGPDLADVRGQLQARRALEITAVGGHHLLLIGPPGTGKTMLAERLPGILPPLSE
SEALETCAVLSVAGQATDLVHWRRRPFRSPHHTASAVALVGGGSYPRPGEVSLAHNGVLFLDELPEFSRHVLEVLREPME
SGHIMISRAARQSTFPAQFQLVAAMNPCPCGYAGDPRCQCTPDQIQRYRGRISGPLLDRIDLCVEVPPVPLADLGAPRSD
RDEDSATVRARVLNARRQSLMRAGRPNAEISTRELERDCALGAPERRWFEAALERLGLSARAYHRVLRVARTIADLDGGA
ALLEREHLAEALQYRRF

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1009303 ABNK63_RS01645 WP_083845887.1 387164..388657(+) (comM) [Rhodanobacter sp. IGA1.0]
ATGAGTCTTGCCGTTACCCTCAGCCGTGCACAGGAAGGAATCGCCGCACCGCAAGTGATGGTCGAGGTGCATCTTTCCGG
TGGTCTGCCGTGCACCAACATCGTCGGCCTGCCCGAGGCTGCGGTGCGCGAGGCGCGCGATCGCGTGCGCGTGGCGATCC
AGAACACCGCGTTCGAATATCCCGGTCGCCGCGTCACCGTGAATCTCGCGCCAGCGGAACTGCCCAAGGACGGCGGTCGG
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCAGCGGCCAGGTGCCGCGCGAGAAACTCGACGACTGTGAATTCCT
TGGCGAGTTGGCGCTGAGCGGCACGCTGCGCAGTGTATCGGGTGTGCTGCCGGCCCTGCTGCGCGCGCGGGCGCGCGGGC
GCCGGGTGGTGGTGCCGCGGGAGAACGCCGCCGAAGCGGCGCTGGTGGCCGACGTCGACGTGCGCGTGGCCGATACGCTG
GCCGAGGTCTGCGGCTGGTTGCGGGGCGCCCACGAGCTGTCGATGCCGGTCGGCATTCCCAGCAACGGCGGTGCGGAAGA
CGGCCCCGACCTGGCCGACGTGCGCGGGCAGTTGCAGGCGCGCCGCGCGCTGGAAATCACCGCCGTGGGTGGCCACCACC
TGCTGCTGATCGGCCCGCCCGGCACGGGCAAGACCATGCTGGCCGAACGCCTGCCCGGCATCCTGCCGCCGCTGAGCGAG
TCCGAAGCGCTGGAGACCTGCGCCGTGCTGTCGGTGGCGGGCCAGGCGACCGACCTGGTGCACTGGCGACGCCGCCCGTT
CCGTTCCCCCCATCACACCGCGTCCGCGGTGGCCCTGGTCGGCGGCGGTTCGTACCCGCGGCCGGGCGAGGTGTCGCTGG
CGCACAACGGCGTGCTGTTCCTCGACGAGCTGCCGGAGTTCAGCCGGCACGTACTGGAGGTGCTGCGCGAGCCGATGGAG
TCGGGCCACATCATGATTTCGCGGGCGGCGCGGCAGTCGACCTTCCCGGCTCAGTTCCAGCTGGTGGCGGCGATGAATCC
GTGTCCCTGCGGTTACGCCGGCGACCCCCGCTGCCAGTGCACGCCCGACCAGATCCAGCGCTACCGCGGGCGCATTTCCG
GCCCGCTGCTGGACCGCATCGACCTGTGCGTGGAAGTGCCGCCGGTGCCCCTGGCCGATCTGGGTGCGCCCCGCAGCGAT
CGCGACGAGGACTCCGCCACGGTGCGCGCGCGCGTGCTCAACGCGCGGCGGCAATCGCTGATGCGGGCGGGTCGGCCGAA
CGCGGAAATCAGCACCCGTGAGCTGGAGCGCGATTGTGCGCTGGGCGCCCCCGAGCGGCGCTGGTTCGAAGCCGCGCTGG
AGCGGCTGGGCCTGTCCGCACGCGCGTATCACCGCGTGCTGCGGGTGGCCCGCACGATCGCCGACCTGGACGGTGGCGCC
GCCCTGCTCGAACGCGAGCACCTGGCCGAGGCGCTGCAGTACCGCCGCTTCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.354

99.598

0.551
  comM Vibrio campbellii strain DS40M4

54.545

99.598

0.543
  comM Glaesserella parasuis strain SC1401

53.307

100

0.535
  comM Haemophilus influenzae Rd KW20

53.106

100

0.533
  comM Legionella pneumophila str. Paris

50.902

100

0.511
  comM Legionella pneumophila strain ERS1305867

50.902

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.4

100

0.457

Multiple sequence alignment