Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   ABKA15_RS07195 Genome accession   NZ_CP157941
Coordinates   1468543..1469202 (+) Length   219 a.a.
NCBI ID   WP_186832755.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_010     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1463543..1474202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA15_RS07170 (ABKA15_07165) - 1464821..1465546 (+) 726 WP_186832593.1 pseudouridine synthase -
  ABKA15_RS07175 (ABKA15_07170) - 1465674..1466931 (+) 1258 WP_350015332.1 ISL3 family transposase -
  ABKA15_RS07180 (ABKA15_07175) - 1466990..1467370 (-) 381 WP_106082915.1 rhodanese-like domain-containing protein -
  ABKA15_RS07185 (ABKA15_07180) - 1467364..1467588 (-) 225 WP_003043479.1 YqgQ family protein -
  ABKA15_RS07190 (ABKA15_07185) - 1467862..1468389 (-) 528 WP_186832754.1 Dps family protein -
  ABKA15_RS07195 (ABKA15_07190) cclA/cilC 1468543..1469202 (+) 660 WP_186832755.1 A24 family peptidase Machinery gene
  ABKA15_RS07200 (ABKA15_07195) trpB 1469362..1470558 (-) 1197 WP_264341044.1 tryptophan synthase subunit beta -
  ABKA15_RS07205 (ABKA15_07200) - 1470943..1471473 (-) 531 WP_186832757.1 VanZ family protein -
  ABKA15_RS07210 (ABKA15_07205) rlmN 1471466..1472548 (-) 1083 WP_350015333.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  ABKA15_RS07215 (ABKA15_07210) - 1472587..1473150 (-) 564 WP_049512409.1 YutD-like domain-containing protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24869.28 Da        Isoelectric Point: 8.2951

>NTDB_id=1009128 ABKA15_RS07195 WP_186832755.1 1468543..1469202(+) (cclA/cilC) [Streptococcus sp. KHUD_010]
MIHFYFFLVGSIVASFLGLVIDRFPEQSIISPSSHCNTCGQKLAPRDLVPVLSQLINRLRCRFCQSKIPIRYLILELVGG
LLFLATSLSYLNISQLVLLIMGITLALYDQREQEYPILIWLFFHLLLLFLVGFNLLMISFLALGIVAFFFDLRIGAGDFL
FLSSCSTVFKLTEILWLIQIASLVGLCLFCLKKRKDRIAFVPCLLIGVIVLLLYELLLP

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1009128 ABKA15_RS07195 WP_186832755.1 1468543..1469202(+) (cclA/cilC) [Streptococcus sp. KHUD_010]
ATGATTCATTTTTATTTTTTCTTGGTTGGAAGCATTGTGGCTTCTTTTTTAGGGCTGGTTATTGATCGCTTTCCTGAACA
ATCTATTATCAGTCCTTCCAGTCATTGTAATACTTGTGGACAGAAATTAGCACCTCGTGATTTAGTCCCTGTCCTTTCTC
AGCTTATCAATCGACTGCGTTGTCGGTTTTGTCAGTCAAAAATTCCCATTCGCTACTTGATATTAGAGTTGGTAGGTGGT
TTACTCTTTCTCGCAACTTCCTTAAGCTACTTAAATATCAGCCAGCTTGTCTTGCTCATAATGGGAATTACACTAGCTCT
TTATGATCAAAGAGAACAGGAATATCCTATCCTCATTTGGTTGTTCTTTCATCTTCTTCTCCTATTTTTGGTAGGTTTTA
ATCTTCTAATGATTAGTTTTTTAGCCCTTGGAATAGTAGCTTTTTTCTTTGACTTACGAATTGGCGCAGGAGACTTTCTT
TTTCTATCTTCTTGTTCAACTGTTTTCAAGTTGACAGAGATTCTTTGGCTGATTCAAATTGCCAGCTTAGTGGGATTATG
TCTCTTTTGCTTAAAAAAGAGAAAAGACAGGATAGCTTTCGTTCCCTGTCTTTTGATTGGAGTGATTGTTCTGCTTCTGT
ACGAACTGTTGCTTCCATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

57.339

99.543

0.571
  cclA/cilC Streptococcus pneumoniae Rx1

57.339

99.543

0.571
  cclA/cilC Streptococcus pneumoniae D39

57.339

99.543

0.571
  cclA/cilC Streptococcus pneumoniae R6

57.339

99.543

0.571
  cclA/cilC Streptococcus mitis NCTC 12261

56.881

99.543

0.566
  cclA/cilC Streptococcus pneumoniae TIGR4

56.422

99.543

0.562

Multiple sequence alignment