Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QUE41_RS19670 Genome accession   NZ_AP027368
Coordinates   4248550..4249203 (-) Length   217 a.a.
NCBI ID   WP_286340652.1    Uniprot ID   -
Organism   Ferrimonas sp. YFM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4243550..4254203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE41_RS19650 (F0521_37950) - 4245648..4246067 (-) 420 WP_286340648.1 organic hydroperoxide resistance protein -
  QUE41_RS19655 (F0521_37960) - 4246510..4247835 (-) 1326 WP_286340649.1 hypothetical protein -
  QUE41_RS19660 (F0521_37970) - 4247938..4248141 (+) 204 WP_286340650.1 hypothetical protein -
  QUE41_RS19665 (F0521_37980) - 4248168..4248482 (+) 315 WP_286340651.1 hypothetical protein -
  QUE41_RS19670 (F0521_37990) ssb 4248550..4249203 (-) 654 WP_286340652.1 single-stranded DNA-binding protein Machinery gene
  QUE41_RS19675 (F0521_38000) - 4249268..4249966 (-) 699 WP_286340653.1 hypothetical protein -
  QUE41_RS19680 (F0521_38010) - 4249989..4251350 (-) 1362 WP_286342984.1 MFS transporter -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23507.51 Da        Isoelectric Point: 5.2870

>NTDB_id=100912 QUE41_RS19670 WP_286340652.1 4248550..4249203(-) (ssb) [Ferrimonas sp. YFM]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSETWKDQQGQQQERTEWHRVVMFRRLAEIAGEYLRKGSKVYLE
GKLQTRKWQDNNGQDRYTTEVVAEEMQMLDSRGGQQGGGFQGGQQSGGFQGGQQSGGFQGGQQSGGFQGGQQSGGFQGGQ
QQGGGYGQQQSAPRQAAPQQKPAAAAPQQKPAAPQQQNQQQSYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 654 bp        

>NTDB_id=100912 QUE41_RS19670 WP_286340652.1 4248550..4249203(-) (ssb) [Ferrimonas sp. YFM]
ATGGCCAGCCGTGGCGTCAATAAAGTGATTCTCGTTGGTAACCTGGGACAGGATCCCGAGGTTCGTTACATGCCAAACGG
TAATGCCGTGGCGAACATCACCGTAGCAACCAGTGAAACCTGGAAAGACCAGCAGGGTCAGCAGCAGGAGCGTACTGAGT
GGCACCGTGTTGTGATGTTCCGTCGTCTGGCCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCCAAGGTTTACCTGGAA
GGCAAACTGCAAACTCGTAAGTGGCAGGACAACAACGGCCAGGACCGTTACACCACCGAAGTGGTTGCGGAAGAGATGCA
GATGCTGGATTCCCGTGGCGGCCAGCAAGGCGGCGGTTTCCAGGGTGGCCAGCAAAGTGGCGGCTTCCAGGGCGGCCAGC
AAAGCGGTGGCTTCCAGGGTGGCCAGCAAAGCGGTGGCTTCCAGGGTGGCCAGCAAAGTGGTGGCTTCCAGGGTGGCCAG
CAGCAAGGTGGTGGCTACGGTCAGCAGCAGTCTGCTCCCCGTCAGGCAGCCCCTCAGCAGAAGCCTGCCGCTGCAGCGCC
TCAGCAAAAGCCTGCCGCACCTCAGCAGCAGAACCAGCAGCAGAGCTACACCCCGGATCTGGACGACGGTTGGGACGACG
ATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.45

100

0.516
  ssb Glaesserella parasuis strain SC1401

50.467

98.618

0.498
  ssb Neisseria meningitidis MC58

43.779

100

0.438
  ssb Neisseria gonorrhoeae MS11

44.601

98.157

0.438

Multiple sequence alignment