Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   H0501_RS06855 Genome accession   NZ_LR822008
Coordinates   1327451..1329418 (-) Length   655 a.a.
NCBI ID   WP_179970627.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_18     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1322451..1334418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0501_RS06835 (STHERMO_1513) - 1322954..1323883 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein -
  H0501_RS06840 (STHERMO_1514) amiE 1323876..1324961 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  H0501_RS06845 (STHERMO_1515) amiD 1324971..1325897 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  H0501_RS06850 (STHERMO_1516) amiC 1325897..1327390 (-) 1494 WP_179970628.1 ABC transporter permease Regulator
  H0501_RS06855 (STHERMO_1517) amiA3 1327451..1329418 (-) 1968 WP_179970627.1 peptide ABC transporter substrate-binding protein Regulator
  H0501_RS06860 (STHERMO_1519) - 1329724..1330871 (+) 1148 WP_095559415.1 IS3 family transposase -
  H0501_RS06865 - 1330909..1331093 (-) 185 Protein_1314 IS3 family transposase -
  H0501_RS10090 - 1331087..1331497 (-) 411 Protein_1315 ATP-binding cassette domain-containing protein -
  H0501_RS06880 (STHERMO_1522) - 1331529..1331843 (-) 315 Protein_1316 TatD family hydrolase -
  H0501_RS06885 (STHERMO_1523) - 1332192..1333397 (+) 1206 WP_011681420.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 71940.84 Da        Isoelectric Point: 4.9774

>NTDB_id=1008951 H0501_RS06855 WP_179970627.1 1327451..1329418(-) (amiA3) [Streptococcus thermophilus isolate STH_CIRM_18]
MKKSKWLALAGVALLGVGVLAACSSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKSVVTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVGVK
AIDDYTLQYTLKQPEPYWNSKITYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWDKK
NVHFDAIKFSYYDGSDQDALVRGFTDGAYNFARVFPTSSNYASVEKKYKDNIFYTEPGASTSVIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQVNGKDGAALALRNLFVPYDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
ADGQDGLYNDEKAKTEFAKAKEALQGEGVQFPVHLDLPVDQSSKLNVAQAQSLKQTIEKSLGSENVVIDINQLSSDDLEN
ATLNAANAAAEDWDISNGVGWGPDYQDPSTYLDILKTTSSENTKTFNGYDDPNNAAAAQVGLKDYDALLDSAASETTDIN
ARYDRYAQAQAWLEDSSLIIPLTVSNGAAPVISRLTPFTGASIQVGDKGSSYVKYVKSQEKVVTKKEYEQSREKWLKEKK
ASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=1008951 H0501_RS06855 WP_179970627.1 1327451..1329418(-) (amiA3) [Streptococcus thermophilus isolate STH_CIRM_18]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAGCGGCTTGTTCATCTAAATC
AAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATACGGGAC
CTACAAAATCTGTTGTGACAAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGCGGATTCCAAAGCAGGTGGTATCT
ATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGTGTCAAG
GCAATTGATGACTATACTTTGCAGTACACGCTTAAGCAACCAGAACCATACTGGAACTCTAAGATAACTTATAGTTTGCT
TTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTTTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGACAAGAAA
AATGTACACTTTGATGCCATCAAATTCTCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCACTGATGG
TGCTTATAATTTTGCTCGTGTCTTTCCAACAAGTTCAAACTATGCTTCTGTAGAAAAAAAATATAAAGATAATATTTTTT
ACACAGAACCAGGTGCATCTACATCGGTTATTGGTGTAAACATTGACCGCCAAAGCTATAAATTCTCAGCTAAGAAGACA
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTTCGTCAATCAATCAACTTCGCTATTGATCGTAC
AGCCTATCAATCACAAGTAAACGGTAAAGATGGCGCAGCTCTTGCTCTACGTAACCTTTTTGTTCCTTATGATTTTGTCA
GTGCAGGCGATAAGACCTTTGGTGATCTTGTGACAGAAAAAATGAGCTCTTATGGTGATGAGTGGTCTGGTGTTAACTTT
GCAGATGGTCAAGACGGTCTCTACAATGATGAAAAAGCTAAGACTGAGTTTGCCAAAGCCAAAGAGGCTCTTCAAGGAGA
AGGGGTACAATTCCCAGTTCACTTAGACCTTCCAGTTGATCAAAGCTCTAAACTTAATGTTGCCCAAGCCCAATCTTTGA
AACAAACCATTGAAAAATCATTGGGTAGCGAAAATGTTGTTATAGATATTAACCAATTGTCATCTGATGATTTGGAAAAT
GCAACACTTAATGCAGCCAACGCAGCAGCAGAAGACTGGGATATTTCTAACGGTGTGGGTTGGGGTCCAGACTATCAAGA
TCCATCAACTTATCTTGATATCTTAAAAACAACATCAAGTGAAAATACCAAGACTTTCAATGGTTATGATGATCCAAACA
ATGCAGCAGCAGCCCAAGTAGGTCTTAAGGATTATGATGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACATCAAC
GCTCGTTACGACCGTTATGCTCAAGCCCAAGCTTGGTTGGAAGATAGCTCTCTTATCATTCCATTGACTGTTAGTAACGG
TGCAGCACCTGTTATCTCACGTTTGACACCATTTACGGGTGCTAGCATACAGGTGGGTGATAAGGGCTCATCCTACGTCA
AATATGTGAAATCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAGAAA
GCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

93.607

100

0.939
  amiA3 Streptococcus thermophilus LMG 18311

93.303

100

0.936
  amiA Streptococcus salivarius strain HSISS4

91.463

100

0.916