Detailed information NTG1008949

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: H0501_RS06845
• Genome accession: NZ_LR822008
• Coordinates: 1324971..1325897 (-)
• Length: 308 a.a.
• NCBI ID: WP_002946409.1
• Uniprot ID: Q5M3H5
• Organism: Streptococcus thermophilus isolate STH_CIRM_18
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1319971..1330897

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0501_RS06815 (STHERMO_1509)	-	1320049..1320843 (-)	795	WP_011681412.1	HAD-IIB family hydrolase	-
H0501_RS06820 (STHERMO_1510)	-	1321027..1321404 (+)	378	WP_011681413.1	GntR family transcriptional regulator	-
H0501_RS06825 (STHERMO_1511)	-	1321409..1322107 (+)	699	WP_014608540.1	ABC transporter ATP-binding protein	-
H0501_RS06830 (STHERMO_1512)	-	1322119..1322904 (+)	786	WP_002951425.1	hypothetical protein	-
H0501_RS06835 (STHERMO_1513)	-	1322954..1323883 (-)	930	WP_011681415.1	ATP-binding cassette domain-containing protein	-
H0501_RS06840 (STHERMO_1514)	amiE	1323876..1324961 (-)	1086	WP_011226304.1	ABC transporter ATP-binding protein	Regulator
H0501_RS06845 (STHERMO_1515)	amiD	1324971..1325897 (-)	927	WP_002946409.1	oligopeptide ABC transporter permease OppC	Regulator
H0501_RS06850 (STHERMO_1516)	amiC	1325897..1327390 (-)	1494	WP_179970628.1	ABC transporter permease	Regulator
H0501_RS06855 (STHERMO_1517)	amiA3	1327451..1329418 (-)	1968	WP_179970627.1	peptide ABC transporter substrate-binding protein	Regulator
H0501_RS06860 (STHERMO_1519)	-	1329724..1330871 (+)	1148	WP_095559415.1	IS3 family transposase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34694.85 Da
• Isoelectric Point: 9.7054

>NTDB_id=1008949 H0501_RS06845 WP_002946409.1 1324971..1325897(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_18]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=1008949 H0501_RS06845 WP_002946409.1 1324971..1325897(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_18]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

3D structure

• AlphaFold DB: Q5M3H5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	100	100	1
amiD	Streptococcus thermophilus LMD-9	100	100	1
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964