Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   H0501_RS06850 Genome accession   NZ_LR822008
Coordinates   1325897..1327390 (-) Length   497 a.a.
NCBI ID   WP_179970628.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_18     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1320897..1332390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0501_RS06820 (STHERMO_1510) - 1321027..1321404 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  H0501_RS06825 (STHERMO_1511) - 1321409..1322107 (+) 699 WP_014608540.1 ABC transporter ATP-binding protein -
  H0501_RS06830 (STHERMO_1512) - 1322119..1322904 (+) 786 WP_002951425.1 hypothetical protein -
  H0501_RS06835 (STHERMO_1513) - 1322954..1323883 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein -
  H0501_RS06840 (STHERMO_1514) amiE 1323876..1324961 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  H0501_RS06845 (STHERMO_1515) amiD 1324971..1325897 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  H0501_RS06850 (STHERMO_1516) amiC 1325897..1327390 (-) 1494 WP_179970628.1 ABC transporter permease Regulator
  H0501_RS06855 (STHERMO_1517) amiA3 1327451..1329418 (-) 1968 WP_179970627.1 peptide ABC transporter substrate-binding protein Regulator
  H0501_RS06860 (STHERMO_1519) - 1329724..1330871 (+) 1148 WP_095559415.1 IS3 family transposase -
  H0501_RS06865 - 1330909..1331093 (-) 185 Protein_1314 IS3 family transposase -
  H0501_RS10090 - 1331087..1331497 (-) 411 Protein_1315 ATP-binding cassette domain-containing protein -
  H0501_RS06880 (STHERMO_1522) - 1331529..1331843 (-) 315 Protein_1316 TatD family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55818.68 Da        Isoelectric Point: 10.0158

>NTDB_id=1008950 H0501_RS06850 WP_179970628.1 1325897..1327390(-) (amiC) [Streptococcus thermophilus isolate STH_CIRM_18]
MKRYILLRTLRSILSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKINYENTIFERMGYIDYYDTKELQENAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1008950 H0501_RS06850 WP_179970628.1 1325897..1327390(-) (amiC) [Streptococcus thermophilus isolate STH_CIRM_18]
ATGAAAAGATATATTTTATTGAGAACCCTCCGTTCTATATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCGAACTACAATAAGATTGCAAAGACAGCTGATTCTAAGA
TAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAATGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAGCAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCGGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAACTTTGTGAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACACTCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGACTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMG 18311

97.787

100

0.978
  amiC Streptococcus thermophilus LMD-9

97.384

100

0.974
  amiC Streptococcus salivarius strain HSISS4

96.378

100

0.964

Multiple sequence alignment